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Holimap: an accurate and efficient method for solving stochastic gene network dynamics

Chen Jia, Ramon Grima

Single-cell epigenomic reconstruction of developmental trajectories in human neural organoid systems from pluripotency

Fides Zenk, Jonas Simon Fleck, Sophie Martina Johanna Jansen, et al.

Inferring protein from mRNA concentrations using convolutional neural networks

Patrick Maximilian Schwehn, Pascal Falter-Braun

Inference of drug off-target effects on cellular signaling using Interactome-Based Deep Learning

Nikolaos Meimetis, Douglas A. Lauffenburger, Avlant Nilsson

Biologically informed NeuralODEs for genome-wide regulatory dynamics

Intekhab Hossain, Viola Fanfani, John Quackenbush, et al.

Embryo mechanics cartography: inference of 3D force atlases from fluorescence microscopy

Sacha Ichbiah, Fabrice Delbary, Alex McDougall, et al.

Massively parallel protein-protein interaction measurement by sequencing (MP3-seq) enables rapid screening of protein heterodimers

Alexander Baryshev, Alyssa La Fleur, Benjamin Groves, et al.

Enrichment of gut microbiome strains for cultivation-free genome sequencing using droplet microfluidics

Anna Pryszlak, Tobias Wenzel, Kiley West Seitz, et al.

RefPlantNLR: a comprehensive collection of experimentally validated plant NLRs

Jiorgos Kourelis, Sophien Kamoun

EllipTrack: A Global-Local Cell-Tracking Pipeline for 2D Fluorescence Time-Lapse Microscopy

Chengzhe Tian, Chen Yang, Sabrina L. Spencer

BIAFLOWS: A collaborative framework to benchmark bioimage analysis workflows

Ulysse Rubens, Romain Mormont, Volker Baecker, et al.

benchmarking Single-Cell RNA Sequencing Protocols for Cell Atlas Projects

Elisabetta Mereu, Atefeh Lafzi, Catia Moutinho, et al.

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Systematic comparative analysis of single cell RNA-sequencing methods

Jiarui Ding, Xian Adiconis, Sean K. Simmons, et al.