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Deep learning-based predictions of gene perturbation effects do not yet outperform simple linear methods

Constantin Ahlmann-Eltze, Wolfgang Huber, Simon Anders

Selected by 11 November 2024

Benjamin Dominik Maier

Bioinformatics

Light-microscopy based dense connectomic reconstruction of mammalian brain tissue

Mojtaba R. Tavakoli, Julia Lyudchik, Michał Januszewski, et al.

Selected by 10 June 2024

Cemre Coskun

Neuroscience

Modeling transcriptional profiles of gene perturbation with a deep neural network

Wenke Liu, Xuya Wang, D R Mani, et al.

Selected by 13 February 2024

Raquel Moya

Bioinformatics

Inferring protein from mRNA concentrations using convolutional neural networks

Patrick Maximilian Schwehn, Pascal Falter-Braun

Selected by 20 December 2023

Benjamin Dominik Maier

Bioinformatics

A single cell spatial temporal atlas of skeletal muscle reveals cellular neighborhoods that orchestrate regeneration and become disrupted in aging

Yu Xin Wang, Colin A. Holbrook, James N. Hamilton, et al.

Selected by 15 August 2022

Jessica Chevallier

Bioinformatics

Multiscale light-sheet organoid imaging framework

Gustavo de Medeiros, Raphael Ortiz, Petr Strnad, et al.

Selected by 29 August 2021

Osvaldo Contreras

Bioengineering

DeepImageTranslator: a free, user-friendly graphical interface for image translation using deep-learning and its applications in 3D CT image analysis

Run Zhou Ye, Christophe Noll, Gabriel Richard, et al.

Selected by 03 June 2021

Afonso Mendes

Bioinformatics

A spatially aware likelihood test to detect sweeps from haplotype distributions

Michael DeGiorgio, Zachary A. Szpiech

Selected by 01 June 2021

Matteo Fumagalli

Automated Detection and Diameter Estimation for Mouse Mesenteric Artery using Semantic Segmentation

Akinori Higaki, Ahmad U. M. Mahmoud, Pierre Paradis, et al.

Selected by 11 December 2020

Mariana De Niz

Developmental Biology

Deep learning-enhanced light-field imaging with continuous validation

Nils Wagner, Fynn Beuttenmueller, Nils Norlin, et al.

Selected by 04 November 2020

Mariana De Niz

Bioengineering

Collective ERK/Akt activity waves orchestrate epithelial homeostasis by driving apoptosis-induced survival

Paolo Armando Gagliardi, Maciej Dobrzyński, Marc-Antoine Jacques, et al.

Selected by 13 July 2020

Mariana De Niz

Cell Biology

Practical Fluorescence Reconstruction Microscopy for Large Samples and Low-Magnification Imaging

Julienne LaChance, Daniel J. Cohen

Selected by 02 July 2020

Mariana De Niz

Cell Biology