Bioinformatics Archives

Accurate detection of m6A RNA modifications in native RNA sequences

Huanle Liu, Oguzhan Begik, Morghan C Lucas, et al.

Selected by

Christian Bates

Slide-seq: A Scalable Technology for Measuring Genome-Wide Expression at High Spatial Resolution

Samuel G Rodriques, Robert R Stickels, Aleksandrina Goeva, et al.

AND

High-density spatial transcriptomics arrays for in situ tissue profiling

Sanja Vickovic, Goekcen Eraslan, Johanna Klughammer, et al.

Selected by

Carmen Adriaens

Endogenous CRISPR arrays for scalable whole organism lineage tracing

James Cotterell, James Sharpe

Selected by

Irepan Salvador-Martinez

Lineage tracing on transcriptional landscapes links state to fate during differentiation

Caleb Weinreb, Alejo E Rodriguez-Fraticelli, Fernando D Camargo, et al.

Selected by

Yen-Chung Chen

Charting a tissue from single-cell transcriptomes

Mor Nitzan, Nikos Karaiskos, Nir Friedman, et al.

Selected by

Irepan Salvador-Martinez

Large-scale analyses of human microbiomes reveal thousands of small, novel genes and their predicted functions

Hila Sberro, Nicholas Greenfield, Georgios Pavlopoulos, et al.

Selected by

Ganesh Kadamur

Atlas of Subcellular RNA Localization Revealed by APEX-seq

Furqan M Fazal, Shuo Han, Pornchai Kaewsapsak, et al.

AND

Proximity RNA labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

Alejandro Padron, Shintaro Iwasaki, Nicholas Ingolia

Selected by

Christian Bates

Applications, Promises, and Pitfalls of Deep Learning for Fluorescence Image Reconstruction

Chinmay Belthangady , Loic A. Royer

Selected by

Romain F. Laine

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Filtered by bioinformatics category

Accurate detection of m6A RNA modifications in native RNA sequences

Slide-seq: A Scalable Technology for Measuring Genome-Wide Expression at High Spatial Resolution

High-density spatial transcriptomics arrays for in situ tissue profiling

Endogenous CRISPR arrays for scalable whole organism lineage tracing

Lineage tracing on transcriptional landscapes links state to fate during differentiation

Charting a tissue from single-cell transcriptomes

Large-scale analyses of human microbiomes reveal thousands of small, novel genes and their predicted functions

Atlas of Subcellular RNA Localization Revealed by APEX-seq

Proximity RNA labeling by APEX-Seq Reveals the Organization of Translation Initiation Complexes and Repressive RNA Granules

Applications, Promises, and Pitfalls of Deep Learning for Fluorescence Image Reconstruction