Keystone Symposia – Single Cell Biology

Preprints presented at the Single Cell Biology Keystone Symposia 13-17 January, 2019 in Breckenridge, Colorado

List by Mate Palfy


A comparison of single-cell trajectory inference methods: towards more accurate and robust tools

Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys

TooManyCells identifies and visualizes relationships of single-cell clades

Gregory W Schwartz, Jelena Petrovic, Maria Fasolino, Yeqiao Zhou, Stanley Cai, Lanwei Xu, Warren S Pear, Golnaz Vahedi, Robert B Faryabi

Single cell multi-omics profiling reveals a hierarchical epigenetic landscape during mammalian germ layer specification

Ricard Argelaguet, Hisham Mohammed, Stephen Clark, Carine Stapel, Christel Krueger, Chantriolnt Andreas Kapourani, Yunlong Xiang, Courtney Hanna, Sebastien Smallwood, Ximena Ibarra Soria, Florian Buettner, Guido Sanguinetti, Felix Krueger, Wei Xie, Peter Rugg-Gunn, Gavin Kelsey, Wendy Dean, Jennifer Nichols, Oliver Stegle, John C Marioni, Wolf Reik

Spatiotemporal Dynamics of Molecular Pathology in Amyotrophic Lateral Sclerosis

Silas Maniatis, Tarmo Äijö, Sanja Vickovic, Catherine Braine, Kristy Kang, Annelie Mollbrink, Delphine Fagegaltier, Žaneta Andrusivová, Sami Saarenpää, Gonzalo Saiz-Castro, Miguel Cuevas, Aaron Watters, Joakim Lundeberg, Richard Bonneau, Hemali Phatnani

High-throughput targeted long-read single cell sequencing reveals the clonal and transcriptional landscape of lymphocytes

Mandeep Singh, Ghamdan Al-Eryani, Shaun Carswell, James M. Ferguson, James Blackburn, Kirston Barton, Daniel Roden, Fabio Luciani, Tri Phan, Simon Junankar, Katherine Jackson, Christopher C. Goodnow, Martin A. Smith, Alexander Swarbrick

Highly multiplexed in situ protein imaging with signal amplification by Immuno-SABER

Sinem K. Saka, Yu Wang, Jocelyn Y. Kishi, Allen Zhu, Yitian Zeng, Wenxin Xie, Koray Kirli, Clarence Yapp, Marcelo Cicconet, Brian J. Beliveau, Sylvain W. Lapan, Siyuan Yin, Millicent Lin, Edward S. Boyden, Pascal S. Kaeser, German Pihan, George M. Church, Peng Yin

MULTI-seq: Scalable sample multiplexing for single-cell RNA sequencing using lipid-tagged indices

Christopher S. McGinnis, David M. Patterson, Juliane Winkler, Marco Y. Hein, Vasudha Srivastava, Daniel N. Conrad, Lyndsay M. Murrow, Jonathan S. Weissman, Zena Werb, Eric D. Chow, Zev J. Gartner

Spatial single-cell profiling of intracellular metabolomes in situ

Luca Rappez, Mira Stadler, Sergio Heli Triana Sierra, Prasad Phapale, Mathias Heikenwalder, Theodore Alexandrov

DoubletFinder: Doublet detection in single-cell RNA sequencing data using artificial nearest neighbors

Christopher S. McGinnis, Lyndsay M. Murrow, Zev J. Gartner

A comparison of single-cell trajectory inference methods: towards more accurate and robust tools

Wouter Saelens, Robrecht Cannoodt, Helena Todorov, Yvan Saeys

Graph abstraction reconciles clustering with trajectory inference through a topology preserving map of single cells

F. Alexander Wolf, Fiona Hamey, Mireya Plass, Jordi Solana, Joakim S. Dahlin, Berthold Göttgens, Nikolaus Rajewsky, Lukas Simon, Fabian J. Theis

Generative modeling and latent space arithmetics predict single-cell perturbation response across cell types, studies and species

Mohammad Lotfollahi, F. Alexander Wolf, Fabian J. Theis


Posted on: 20 May 2019 , updated on: 8 November 2019

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