Conference: CSHL Genome Organization and Nuclear Function 2020

[under construction] Preprints presented at the (fully virtual) CSHL Genome Organization and Nuclear Function 2020 meeting #cshlnucleus

List by Dey Lab

Preprints:

Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes

Jennifer M. Luppino, Daniel S. Park, Son C. Nguyen, Yemin Lan, Zhuxuan Xu, Eric F. Joyce

https://www.biorxiv.org/content/10.1101/649335v2

3DeFDR: Identifying cell type-specific looping interactions with empirical false discovery rate guided thresholding

Lindsey Fernandez, Thomas G. Gilgenast, Jennifer E. Phillips-Cremins

https://www.biorxiv.org/content/10.1101/501056v1

Unexpected variability of allelic imbalance estimates from RNA sequencing

Asia Mendelevich, Svetlana Vinogradova, Saumya Gupta, Andrey A. Mironov, Shamil Sunyaev, Alexander A. Gimelbrant

https://www.biorxiv.org/content/10.1101/2020.02.18.948323v1

ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis

Jeffrey M Granja, M. Ryan Corces, Sarah E Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Chang, William Greenleaf

https://www.biorxiv.org/content/10.1101/2020.04.28.066498v1

Replication timing maintains the global epigenetic state in human cells

Kyle N. Klein, Peiyao A. Zhao, Xiaowen Lyu, Daniel A. Bartlett, Amar Singh, Ipek Tasan, Lotte P. Watts, Shin-ichiro Hiraga, Toyoaki Natsume, Xuemeng Zhou, Danny Leung, Masato T. Kanemaki, Anne D. Donaldson, Huimin Zhao, Stephen Dalton, Victor G. Corces, David M. Gilbert

https://www.biorxiv.org/content/10.1101/2019.12.28.890020v1

Multi-contact 3C data reveal that the human genome is largely unentangled

Filipe Tavares-Cadete, Davood Norouzi, Bastiaan Dekker, Yu Liu, Job Dekker

https://www.biorxiv.org/content/10.1101/2020.03.03.975425v1

Posted on: 1 May 2020

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