Conference: CSHL Genome Organization and Nuclear Function 2020

[under construction] Preprints presented at the (fully virtual) CSHL Genome Organization and Nuclear Function 2020 meeting #cshlnucleus

List by Dey Lab


Cohesin promotes stochastic domain intermingling to ensure proper regulation of boundary-proximal genes

Jennifer M. Luppino, Daniel S. Park, Son C. Nguyen, Yemin Lan, Zhuxuan Xu, Eric F. Joyce

3DeFDR: Identifying cell type-specific looping interactions with empirical false discovery rate guided thresholding

Lindsey Fernandez, Thomas G. Gilgenast, Jennifer E. Phillips-Cremins

Unexpected variability of allelic imbalance estimates from RNA sequencing

Asia Mendelevich, Svetlana Vinogradova, Saumya Gupta, Andrey A. Mironov, Shamil Sunyaev, Alexander A. Gimelbrant

ArchR: An integrative and scalable software package for single-cell chromatin accessibility analysis

Jeffrey M Granja, M. Ryan Corces, Sarah E Pierce, S. Tansu Bagdatli, Hani Choudhry, Howard Chang, William Greenleaf

Replication timing maintains the global epigenetic state in human cells

Kyle N. Klein, Peiyao A. Zhao, Xiaowen Lyu, Daniel A. Bartlett, Amar Singh, Ipek Tasan, Lotte P. Watts, Shin-ichiro Hiraga, Toyoaki Natsume, Xuemeng Zhou, Danny Leung, Masato T. Kanemaki, Anne D. Donaldson, Huimin Zhao, Stephen Dalton, Victor G. Corces, David M. Gilbert

Multi-contact 3C data reveal that the human genome is largely unentangled

Filipe Tavares-Cadete, Davood Norouzi, Bastiaan Dekker, Yu Liu, Job Dekker


Posted on: 1 May 2020

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