Tasting the differences: microbiota analysis of different insect-based novel food

Jessica Frigerio, Giulia Agostinetto, Andrea Galimberti, Fabrizio De Mattia, Massimo Labra, Antonia Bruno

Preprint posted on 20 February 2020

Article now published in Food Research International at

A step forwards for edible insect food safety: core microbiota of processed cricket and mealworm flours, pastas, crackers, and protein bars identified using high throughput DNA sequencing.

Selected by Matt Muzzatti

Categories: microbiology


Insects are the potential super food of the future – they are rich in macronutrients, have comparably higher protein content than conventional meat products, and farming insects is more environmentally friendly compared to other livestock. Insects could be a sustainable solution to the problem of food security, but there remain hurdles to gain acceptance among consumers and governments. Food safety is a key component to the worldwide acceptance of edible insects, and safety regulations vary from country to country.

A negative stigma is associated with edible insects: those who do not support the entomophagy movement perceive eating insects as disgusting. Now imagine if a disease outbreak or poisoning occurred because of a lack of research or regulations? It would be a massive blow to an emerging industry seeking to establish insects as a safe and nutritious food source. It’s clear that to successfully promote the entomophagy industry, potential safety risks need to be identified.

Harmful insect microbes represent one of these safety risks. A growing body of literature suggests that growth substrates, diet, insect social behavior, and variable industrial practices can affect the microbial quality of insect food products. This microbial community can even be used as a tracing tool to identify the geographical origin of a food product (Mezzasalma et al. 2017). Using high-throughput DNA sequencing, a high amount of bacterial diversity and variability among whole dried house crickets (Acheta domesticus) and whole dried mealworms (Tenebrio molitor) was identified by Garofalo et al. (2017), and they proposed that some of the microbes they identified COULD act as opportunistic pathogens, such as Listeria spp., Staphylococcus spp., Clostribidum spp., and Bacillus spp.

In this preprint, Frigerio et al. tested the efficacy of high-throughput DNA sequencing to analyze the microbiota variability of 12 commercial edible insect products from 6 different companies in Europe. They examined 4 insect flours, 3 pastas, 2 crackers, and 3 protein bars. Each product only contained 1 of 3 species of insect: house crickets, mealworms or lesser mealworms (Alphitobius diaperinus). They obtained genomic DNA from 250 mg of each food sample and used principal coordinates plots to explore the structure of microbial communities. Heatmap visualization was used to explore microbial abundance.

Key Findings

High-throughput DNA sequencing was effective at analyzing microbial variability among insect food products. All samples yielded good DNA quality, and flour samples had a significantly different microbial community compared to crackers, pasta, and protein bars.

In total, 67 families of bacterial phyla were identified. There was a significant difference among samples belonging to different insects. In fact, each insect had a ‘core microbiota’ formed by a small number of bacteria, although some bacteria were shared between species (Figure 1). These specific microbial signatures could potentially be used as biomarkers to trace insect ingredient origins in food products.

Figure 1. Venn diagram and donut charts of Acheta domesticus, Alphitobius diaperinus and Tenebrio molitor core microbial composition analyzed from 12 different commercial edible insect products including flours, pastas, crackers, and protein bars. From Frigerio et al. 2020 under a CC-BY-NC-ND 4.0 International License.

What I liked about this preprint

The usefulness of high-throughput DNA sequencing at detecting the microbial signatures of edible insect products is a great step for the entomophagy industry. It is a quality assurance protocol that could be standardized and implemented in edible insect regulations to assure food safety.

I found it really cool that each species had a core microbiota associated with it. This should help to avoid and prevent the mislabelling and potential health concerns of insect food products and can hold companies accountable for advertising what species are included in their products. The fish industry has been victim to mislabelling mishaps in the past (Staffen et al. 2017; Xiong et al. 2019), and the entomophagy industry would do well to learn from these mistakes.

Questions for the authors

I assume that all food products have some level of microbial community, so how do the communities you discovered in your research compare with those of pastas, crackers, flours, and protein bars that do not contain any insect product?

You mention that it is conceivable that you only found DNA and no viable cells in the processed food you tested. How would investigations into prebiotic effects help to understand this better? What could be done to test for viable cells in processed edible insect products?


Garofalo C, Osimani A, Milanović V, Taccari M, Cardinali F, Aquilanti L, Riolo P, Ruschioni S, Isidoro N, Clementi F (2017) The microbiota of marketed processed edible insects as revealed by high-throughput sequencing. Food Microbiol 62: 15-22.

Mezzasalma V, Sandionigi A, Bruni I, Bruno A, Lovicu G, Casiraghi M, Labra M (2017) Grape microbiome as a reliable and persistent signature of field origin and environmental conditions in Cannonau wine production PloS ONE 12(9): e0184615.

Staffen CF, Staffen MD, Becker ML, Löfgren SE, Muniz YCN, de Freitas R, Marrero AR (2017) DNA barcoding reveals the mislabeling of fish in a popular tourist destination in Brazil PeerJ 5: e4006. 10.7717/peerj.4006

Xiong X, Yuan F, Huang M, Lu L, Xiong X, Wen J (2019) DNA barcoding revealed mislabeling and potential health concerns with roasted fish products sold across China. J Food Prot 82(7): 1200-1209.

Tags: edible insects, entomophagy

Posted on: 10 May 2020


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