Sexually Dimorphic DNA Damage Responses and Mutation Avoidance in the Mouse Germline
Preprint posted on June 17, 2020 https://www.biorxiv.org/content/10.1101/2020.06.16.155168v1
Throughout a cell’s life, its genome can become damaged by external and internal sources including reactive oxygen species and radiation (e.g ionising radiation; IR). To prevent any damaged DNA persisting and causing a faulty copy of the genome to be passed across generations, cells have many pathways (collectively called the DNA damage response; DDR) in place to tackle DNA lesions, including the use of cell cycle checkpoints. These ‘molecular borders’ can be activated when the cell detects a DNA abnormality. Checkpoints occur at different strategic points during the cell cycle, for example at G1/S, during S-phase, G2/M and at the point of mitotic spindle assembly (Spindle Assembly Checkpoint; SAC) in most Eukaryotes and in many different cell types (1). In primordial germ cells (PGCs), which form the basis for adult germline cells in male and female mammals such as humans and mice, less is known about the workings of the DDR but previous studies support the presence of a robust DDR as germline mutations in adults could be catastrophic for offspring (2,3). Here, Bloom and Schimenti use PGCs from two different stages in mouse development, before the embryo sex is decided and after sex-determination, revealing differences between checkpoint usage before and after sex-determination in PGCs during DDR activation.
- The G1 checkpoint is not well defined in mouse PGCs
To study cell cycle dynamics in PGCs in the presence and absence of DNA damage, the authors used pregnant transgenic mice carrying GFP fused to a transcription factor (Oct4). This means GFP expression is restricted to PGCs. Next, these mice (and their embryos) were exposed to 5Gy IR, prior to sex-determination (at E11.5 stage). After 8hrs, the foetal gonads were dissected, and the cells prepared for flow cytometry. By selecting GFP positive cells and looking at their DNA content, the authors show IR exposure doesn’t elicit a strong G1 cell cycle checkpoint. Instead, PGCs accumulate in G2/M.
Figure shows a selection of data from Bloom and Schimenti. FACs plots show the DNA content of germline cells at taken at different mouse developmental stages (E11.5 and E13.5) in the presence and absence of 5 Gy IR exposure. Plots taken from Fig.1A, 2A and 4A. Figure reproduced under a CC-BY-NC-ND 4.0 International license.
- RNAseq reveals differences between male and female germline cells
Next the authors examined transcriptomes of PGCs under several conditions to ask how IR treatments influenced gene expression before and after sex-determination in the PGCs. First, gene expression in E11.5 PGCs (prior to sex-determination) was examined in the presence and absence of IR 4hrs after treatment. Approximately 300 genes were differentially regulated. Up-regulated genes were likely involved in cellular communication, apoptotic pathway activity and population maintenance.
Next, the authors used RNAseq to examine differences in the transcriptomes of E13.5 PGCs (a stage after sex-determination). By comparing male and female germline cells in the presence and absence of IR treatment, they reveal several differences between the sexes. First, the authors examined male germline derived cells. They found male germline cells can establish a G1 checkpoint when exposed to IR. IR treatment also down-regulates Piwi-interacting RNA (piRNA) expression. piRNAs are non-coding RNAs which contribute to the silencing of transposable genome elements. This suggests male germline cells are more prone to invasions by transposable elements which could undermine genome stability if too many occur unchecked. Whereas, in female germline derived cells, no clear mitotic G1 checkpoint was activated following IR exposure. Instead, IR treatment down-regulated genes associated with pluripotency and an up-regulation of genes associated with retinoic acid (RA) responses. RA (a vitamin A derivative) was shown to trigger meiosis in female germline cells (4) though recently, RA is thought to be dispensable for this purpose leading to questions on the exact role of RA (5). The authors’ data suggests IR treatment of female germline cells causes them to differentiate early but not to enter into premature meiosis supporting the more recent findings regarding RA. They propose that a master regulator of meiotic entry, known as Stra8 (stimulated by retinoic acid) is activated early in response to IR treatment which stops meiosis from beginning in the differentiated cells.
- Checkpoints are needed to stop mutations accumulating in PGCs
To ask what happens when checkpoints are not activated in response to DNA damage in germline cells, the authors performed whole genome sequencing on spermatids from a checkpoint deficient mouse line. In these mice, a factor from the Fanconi Anaemia (FA) complex (fancm; 6) and p21 (a factor which induces cell cycle arrest) were deleted using CRISPR/Cas9 engineering. Deleting p21 partially rescues male germ cell production but still the mice are deficient in checkpoint activation after DNA damage exposure. They found mutations accumulate in germline cells in the double mutant mice (no fancm or p21), when compared to control mouse lines. What is interesting about this finding is that it’s only recently been shown that the FA pathway and its ability to repair intra-strand crosslinks is important for PGCs before they enter meiosis (3). That study shows ‘repair-defective’ PGCs are removed so they can’t pass on serious mutations to the next generation.
What I liked about this preprint:
Understanding how PGCs deal with damage is very important in the context of understanding complex fertility complications and also can be taken in the context of genetic disease transmission. Here, the authors asked what sort of response PGCs take when confronted with DNA damage. Using a combination of approaches, including whole genome sequencing, the authors tackle their questions clearly considering their findings in the context of other published studies. Their data will open up a lot of novel routes of investigation.
Questions for the authors:
- Could you comment on how your findings regarding RA may fit with the recent reports that RA may not be needed for meiosis entry stimulation in germline cells?
- Are the spermatids viable i.e if the embryos were left to develop, would the resulting adult male mice be infertile or generate non-viable offspring?
- What is activating the G1 checkpoint in the male germline cells? Could it be a similar pathway to what is seen in somatic cells at the G1 boundary? Do you see DNA pathways emerging in your RNAseq datasets?
- Do you detect any evidence of intra-strand cross link lesions in your fancm -/- p21 -/- germline derived cells?
- Shaltiel, I.A., Krenning L., Bruinsma, W., and Medema, R.H. The same, only different – DNA damage checkpoints and their reversal throughout the cell cycle. J.C.Sci 128 (2015).
- Hajkova, P., Jeffries, S.J., Lee, C., Miller, N., Jackson S.P., and Surani, M.A. Genome-Wide reprogramming in the mouse germ line entails the base excision repair pathway. Science, 329 (2010).
- Hill, R.J., and Crossan G.P. DNA cross-link repair safeguards genome stability during premeiotic germ cell development. Nat. Gen, 51 (2019).
- Griswold, M.D., Hogarth, C.A., Bowles, J., and Koopman, P. Initiating meiosis: the case for retinoic acid. Biol Reprod. 86 (2012).
- Vernet, N., et al. Meiosis occurs normally in the fetal ovary of mice lacking all retinoic acid receptors. Sci. Adv. 6 (2020).
- Niraj, J., Farkkila, A., and D’Andrea, A.D. The Fanconi anemia pathway in cancer. Ann Rev Cancer Bio 3 (2019).
Posted on: 3rd July 2020 , updated on: 12th July 2020Read preprint
Also in the genetics category:
CTCF Mediates Dosage and Sequence-context-dependent Transcriptional Insulation through Formation of Local Chromatin Domains
|Selected by||Clarice Hong|
SUMO orchestrates multiple alternative DNA-protein crosslink repair pathways
|Selected by||Vanessa Kellner|
Friendly regulates membrane depolarization induced mitophagy in Arabidopsis
|Selected by||Alvaro Montiel-Jorda|
preListsgenetics category:in the
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
|List by||Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Gautam Dey|
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
|List by||Hiral Shah|
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
|List by||Sandra Malmgren Hill|
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
|List by||Shikha Nayar|