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TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Dey Lab
Preprints:
Polyploidy in the adult Drosophila brain
Dense encoding of developmental regulatory information may constrain evolvability
Topology-driven analysis of protein-protein interaction networks detects functional genetic modules regulating reproductive capacity
The transcription regulatory code of a maize leaf
longfin causes cis-ectopic expression of the kcnh2a ether-a-go-go K+ channel to autonomously prolong fin outgrowth
Skeletal geometry and niche transitions restore organ size and shape during zebrafish fin regeneration
Hmx3a does not require its homeodomain for its essential functions in spinal cord, ear and lateral line development
https://www.biorxiv.org/content/10.1101/2020.01.23.917468v2.full
Visualizing the metazoan proliferation-differentiation decision in vivo
Stem cell differentiation trajectories in Hydra resolved at single-cell resolution
Emergence of neuronal diversity during vertebrate brain development
The Vertebrate Codex Gene Breaking Protein Trap Library For Genomic Discovery and Disease Modeling Applications
GCNA interacts with Spartan and Topoisomerase II to regulate genome stability
mRNA localization is linked to translation regulation in the Caenorhabditis elegans germ lineage
A developmental gene regulatory network for invasive differentiation of the C. elegans anchor cell
Dose-dependent functions of SWI/SNF BAF in permitting and inhibiting cell proliferation in vivo
CeMbio - The C. elegans microbiome resource
Regenerative capacity in Drosophila imaginal discs is controlled by damage-responsive, maturity-silenced enhancers
Delineation of the SUMO-Modified Proteome Reveals Regulatory Functions Throughout Meiosis
Shadow enhancers suppress input transcription factor noise through distinct regulatory logic
Reorganization of 3D genome structure in the Drosophila melanogaster species group
Neuropeptide VF neurons promote sleep via the serotonergic raphe
ER stress sensor Ire1 deploys a divergent transcriptional program in response to lipid bilayer stress
Translational control of methionine and serine metabolic pathways underpin the paralog-specific phenotypes of Rpl22 ribosomal protein mutants in cell division and replicative longevity
Unexpected variability of allelic imbalance estimates from RNA sequencing
Mechanism of monoallelic expression and allelic rheostat role of DNA methylation
Natural hybridization reveals incompatible alleles that cause melanoma in swordtail fish
Learning the properties of adaptive regions with functional data analysis
Assembly of a young vertebrate Y chromosome reveals convergent signatures of sex chromosome evolution
Model-based assessments of differential introgression and linked natural selection during divergence and speciation
Functional partitioning of a liquid-like organelle during assembly of axonemal dyneins
A systematic, label-free method for identifying RNA-associated proteins in vivo provides insights into vertebrate ciliary beating
The interaction of crossover formation and the dynamic architecture of the synaptonemal complex during meiosis
Patched regulates lipid homeostasis by controlling cellular cholesterol levels
Most cancers carry a substantial deleterious load due to Hill-Robertson interference
Learning the properties of adaptive regions with functional data analysis
Population genetics of the coral Acropora millepora: Towards a genomic predictor of bleaching
Recombination, variance in genetic relatedness, and selection against introgressed DNA
Extent and context dependence of pleiotropy revealed by high-throughput single-cell phenotyping
Categories: cell biology , developmental biology , evolutionary biology , genetics , genomics , physiology
Posted on: 1st May 2020 , updated on: 4th May 2020
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Register hereAlso in the cell biology category:
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
| List by | Alex Eve |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
| List by | Ana Dorrego-Rivas |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
| List by | Ana Dorrego-Rivas |
BioMalPar XVI: Biology and Pathology of the Malaria Parasite
[under construction] Preprints presented at the (fully virtual) EMBL BioMalPar XVI, 17-18 May 2020 #emblmalaria
| List by | Dey Lab, Samantha Seah |
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Cell Polarity
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
| List by | Yamini Ravichandran |
3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Preprint missing? Don't hesitate to let us know.
| List by | Paul Gerald L. Sanchez and Stefano Vianello |
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
| List by | Hiral Shah |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
| List by | Madhuja Samaddar, Ramona Jühlen, Amanda Haage, Laura McCormick, Maiko Kitaoka |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
| List by | Dey Lab |
Autophagy
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
| List by | Sandra Malmgren Hill |
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
| List by | Rob Hynds |
Cellular metabolism
A curated list of preprints related to cellular metabolism at Biorxiv by Pablo Ranea Robles from the Prelights community. Special interest on lipid metabolism, peroxisomes and mitochondria.
| List by | Pablo Ranea Robles |
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
| List by | Dey Lab |
MitoList
This list of preprints is focused on work expanding our knowledge on mitochondria in any organism, tissue or cell type, from the normal biology to the pathology.
| List by | Sandra Franco Iborra |
Biophysical Society Annual Meeting 2019
Few of the preprints that were discussed in the recent BPS annual meeting at Baltimore, USA
| List by | Joseph Jose Thottacherry |
ASCB/EMBO Annual Meeting 2018
This list relates to preprints that were discussed at the recent ASCB conference.
| List by | Dey Lab, Amanda Haage |
Also in the developmental biology category:
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
| List by | Alex Eve |
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
| List by | Jesus Victorino |
Single Cell Biology 2020
A list of preprints mentioned at the Wellcome Genome Campus Single Cell Biology 2020 meeting.
| List by | Alex Eve |
Society for Developmental Biology 79th Annual Meeting
Preprints at SDB 2020
| List by | Irepan Salvador-Martinez, Martin Estermann |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
| List by | Ana Dorrego-Rivas |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
| List by | Ana Dorrego-Rivas |
Cell Polarity
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
| List by | Yamini Ravichandran |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
| List by | Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Dey Lab |
3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Preprint missing? Don't hesitate to let us know.
| List by | Paul Gerald L. Sanchez and Stefano Vianello |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
| List by | Madhuja Samaddar, Ramona Jühlen, Amanda Haage, Laura McCormick, Maiko Kitaoka |
EDBC Alicante 2019
Preprints presented at the European Developmental Biology Congress (EDBC) in Alicante, October 23-26 2019.
| List by | Sergio Menchero, Jesus Victorino, Teresa Rayon, Irepan Salvador-Martinez |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
| List by | Dey Lab |
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
| List by | Alex Eve |
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
| List by | Rob Hynds |
Young Embryologist Network Conference 2019
Preprints presented at the Young Embryologist Network 2019 conference, 13 May, The Francis Crick Institute, London
| List by | Alex Eve |
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
| List by | Alexa Sadier |
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
| List by | Dey Lab |
Zebrafish immunology
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
| List by | Shikha Nayar |
Also in the evolutionary biology category:
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
| List by | Alex Eve |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
| List by | Ana Dorrego-Rivas |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
| List by | Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Dey Lab |
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
| List by | Hiral Shah |
COVID-19 / SARS-CoV-2 preprints
List of important preprints dealing with the ongoing coronavirus outbreak. See http://covidpreprints.com for additional resources and timeline, and https://connect.biorxiv.org/relate/content/181 for full list of bioRxiv and medRxiv preprints on this topic
| List by | Dey Lab, Zhang-He Goh |
1
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
| List by | Alex Eve |
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
| List by | Alexa Sadier |
Also in the genetics category:
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
| List by | Jesus Victorino |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
| List by | Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Dey Lab |
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
| List by | Hiral Shah |
Autophagy
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
| List by | Sandra Malmgren Hill |
Zebrafish immunology
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
| List by | Shikha Nayar |
Also in the genomics category:
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
| List by | Jesus Victorino |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
| List by | Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Dey Lab |
Also in the physiology category:
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
| List by | Ana Dorrego-Rivas |
Autophagy
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
| List by | Sandra Malmgren Hill |
Cellular metabolism
A curated list of preprints related to cellular metabolism at Biorxiv by Pablo Ranea Robles from the Prelights community. Special interest on lipid metabolism, peroxisomes and mitochondria.
| List by | Pablo Ranea Robles |
Also in the cell biology category:
Lactate Accelerates Mouse ES Cell Differentiation Towards the XEN Lineage
| Selected by | Nozomu Takata |
H3 acetylation selectively promotes basal progenitor proliferation and neocortex expansion by activating TRNP1 expression
| Selected by | Ana Uzquiano |
Clathrin adaptors mediate two sequential pathways of intra-Golgi recycling
| Selected by | Jennifer Ann Black |
1
Also in the developmental biology category:
Lactate Accelerates Mouse ES Cell Differentiation Towards the XEN Lineage
| Selected by | Nozomu Takata |
Development of the foregut in Katharina tunicata (Mollusca; Polyplacophora)
| Selected by | Paul Gerald L. Sanchez and Stefano Vianello |
H3 acetylation selectively promotes basal progenitor proliferation and neocortex expansion by activating TRNP1 expression
| Selected by | Ana Uzquiano |
Also in the evolutionary biology category:
Development of the foregut in Katharina tunicata (Mollusca; Polyplacophora)
| Selected by | Paul Gerald L. Sanchez and Stefano Vianello |
Antiviral activity of bacterial TIR domains via signaling molecules that trigger cell death
| Selected by | Jonny Coates, Connor Rosen |
A developmentally programmed splicing failure attenuates the DNA damage response during mammalian zygotic genome activation
| Selected by | Ram |
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Also in the genetics category:
Ciliary control of meiotic chromosomal pairing mechanics and germ cell morphogenesis
| Selected by | Robert Mahen |
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Fetal estrogens are not involved in sex determination but critical for early ovarian differentiation in rabbits
| Selected by | Nándor Lipták |
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Dissecting Mammalian Spermatogenesis Using Spatial Transcriptomics
| Selected by | Martin Estermann |
Also in the genomics category:
Intergenerational microbial transmission in the little skate (Leucoraja erinacea)
| Selected by | Kiran Gurung |
1
Precise genomic deletions using paired prime editing
| Selected by | Fabio Liberante |
1
EccDNA formation is dependent on MMEJ, repressed by c-NHEJ pathway, and stimulated by DNA double-strand break
| Selected by | Ram |
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Also in the physiology category:
Skeletal muscle mitochondrial dysfunction in mice is linked to bone loss via the bone marrow immune microenvironment
| Selected by | Andrea Irazoki |
Ciliary control of meiotic chromosomal pairing mechanics and germ cell morphogenesis
| Selected by | Robert Mahen |
1
Intraspecific variation in thermal tolerance differs between tropical and temperate fishes
| Selected by | Charlotte Nelson |