EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)

A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.

List by Alex Eve

Preprints:

Synthetic multistability in mammalian cells

Ronghui Zhu, Jesus M. del Rio-Salgado, Jordi Garcia-Ojalvo, Michael B. Elowitz

https://www.biorxiv.org/content/10.1101/2021.02.10.430659v1

A Modular Computational Framework for the Design of Multicellular Genetic Circuits of Morphogenesis

Calvin Lam, Leonardo Morsut

https://www.biorxiv.org/content/10.1101/784496v2

Programmed mechano-chemical coupling in reaction-diffusion active matter

Anis Senoussi, Jean-Christophe Galas, André Estevez-Torres

https://www.biorxiv.org/content/10.1101/2021.03.13.435232v1

Cell shape anisotropy and motility constrain self-organised feather pattern fidelity in birds

Camille Curantz, Richard Bailleul, Magdalena Hidalgo, Melina Durande, François Graner, Marie Manceau

https://www.biorxiv.org/content/10.1101/2021.01.22.427778v1

Clinically-driven design of synthetic gene regulatory programs in human cells

Divya V. Israni, Hui-Shan Li, Keith A. Gagnon, Jeffry D. Sander, Kole T. Roybal, J. Keith Joung, Wilson W. Wong, Ahmad S. Khalil

https://www.biorxiv.org/content/10.1101/2021.02.22.432371v1

Controlling spatiotemporal pattern formation in a concentration gradient with a synthetic toggle switch

Içvara Barbier, Rubén Perez Carrasco, Yolanda Schaerli

https://www.biorxiv.org/content/10.1101/849711v1

Chemokine-biased robust self-organizing polarization of migrating cells in vivo

Adan Olguin-Olguin, Anne Aalto, Benoît Maugis, Michal Reichman-Fried, Erez Raz

https://www.biorxiv.org/content/10.1101/857623v1

Computable Early C. elegans Embryo with a Data-driven Phase Field Model

Xiangyu Kuang, Guoye Guan, Ming-Kin Wong, Lu-Yan Chan, Zhongying Zhao, Chao Tang, Lei Zhang

https://www.biorxiv.org/content/10.1101/2020.12.13.422560v2

Lineage optimization in nematode's early embryogenesis

Guoye Guan, Ming-Kin Wong, Zhongying Zhao, Lei-Han Tang, Chao Tang

https://arxiv.org/abs/2007.05723

Asymmetric requirement of Dpp/BMP morphogen dispersal in the Drosophila wing disc

Shinya Matsuda, Jonas V. Schaefer, Yusuke Mii, Yutaro Hori, Dimitri Bieli, Masanori Taira, Andreas Plückthun, Markus Affolter

https://www.biorxiv.org/content/10.1101/2020.11.23.394379v1

Synthetic gene networks recapitulate dynamic signal decoding and differential gene expression

Dirk Benzinger, Serguei Ovinnikov, Mustafa Khammash

https://www.biorxiv.org/content/10.1101/2021.01.07.425755v1

A quantitative landscape of cell fate transitions identifies principles of cellular decision-making

M. Sáez, R. Blassberg, E. Camacho-Aguilar, E. D. Siggia, D. Rand, J. Briscoe

https://www.biorxiv.org/content/10.1101/2021.03.11.434982v1

Programmable pattern formation in cellular systems with local signaling

Tiago Ramalho, Stephan Kremser, Hao Wu, Ulrich Gerland

https://www.biorxiv.org/content/10.1101/2021.03.17.435764v1

Capillary forces drive pioneer transcription factor-mediated DNA condensation

Thomas Quail, Stefan Golfier, Maria Elsner, Keisuke Ishihara, Frank Jülicher, Jan Brugués

https://www.biorxiv.org/content/10.1101/2020.09.17.302299v1

Arrested coalescence of multicellular aggregates

David Oriola, Miquel Marin-Riera, Germaine Aalderink, Kerim Anlas, Nicola Gritti, James Sharpe, Vikas Trivedi

https://arxiv.org/abs/2012.01455

Somite surface tension buffers imprecise segment lengths to ensure left-right symmetry

Sundar R. Naganathan, Marko Popović, Andrew C. Oates

https://www.biorxiv.org/content/10.1101/2020.08.14.251645v2

Categories: bioengineering , biophysics , cell biology , developmental biology , evolutionary biology , molecular biology , synthetic biology , systems biology

Posted on: 18th March 2021 , updated on: 19th March 2021

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