preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by preLights peer supportPreprints:
How to reach out to contribute (either to suggest preprints OR to write a preLight)?
preLighters: slack DMs
others: email to girish.kale [at] cos.uni-heidelberg.de OR use the Contact form above. In either case, please add ‘preLights peer support’ in the subject line.
What all information is available in this preList?
This preList contains various details about interesting preprints. The preprints are typically associated with a preLighter, who is willing to play the role of “editor” (for the time being, Girish Kale is the ‘default’ preLighter). When someone has already reached out to highlight a preprint, the name of the writer will appear in the preprint description (if this is (you?), the preprint is still ‘up for grabs’). Each preprint will also carry a bunch of keywords: these could be from the preprint itself, or additional ones based on a quick reading of the manuscript. Additionally, if the preprint is already highlighted through the initiative, then a link to the preLight post will appear below. Once the manuscript is published, there will be a link to the published version of records. If the manuscript is published before a preLight is written about it, then that manuscript will be removed from this preList, as these preprints can’t be highlighted anymore.
How is the preList page organised?
The preprints are sorted reverse-chronologically (latest preprints on the top). Ideally, the preprints at the top should be preferred over the older ones, though, if you find an older preprint to be really interesting, feel free to reach out to check if it can still be added to the preList, or highlighted if already in the preList. Keep in mind that, sooner or later the old preprints will be published, and can’t be highlighted through preLights anymore.
Diverse Fgfr1 signaling pathways and endocytic trafficking regulate early mesoderm development
https://www.biorxiv.org/content/10.1101/2024.02.16.580629v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, FGF, mesoderm development, kidney development, cell signaling, cell adhesion, endocytic trafficking
preLight: (not yet highlighted)
manuscript is published: (not yet)
Induction and in silico staging of human gastruloids with neural tube, segmented somites & advanced cell types
https://www.biorxiv.org/content/10.1101/2024.02.10.579769v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, human gastruloid, somitogenesis, segmentation, self organization, single cell RNA-seq, WNT, BMP
preLight: (not yet highlighted)
manuscript is published: (not yet)
A tension-induced morphological transition shapes the avian extra-embryonic territory
https://www.biorxiv.org/content/10.1101/2024.02.08.579502v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, extraembryonic tissue
preLight: (not yet highlighted)
manuscript is published: (not yet)
Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium.
https://www.biorxiv.org/content/10.1101/2024.02.08.579268v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, sea star, echinoderm embryo, morphogenesis, 3D epithelial packing, scutoid, computational modelling, deep-learning, AB-T1.
preLight: (not yet highlighted)
manuscript is published: (not yet)
Compressive stress drives morphogenetic apoptosis
https://www.biorxiv.org/content/10.1101/2024.02.08.579454v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, leg disk morphogenesis, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Eyespots originated multiple times independently across the Lepidoptera
https://www.biorxiv.org/content/10.1101/2024.02.07.579046v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Lepidoptera, eye spots
preLight: (not yet highlighted)
manuscript is published: (not yet)
Identifying the molecular basis for functional divergence of duplicated SOX factors controlling endoderm formation and left-right patterning in zebrafish
https://www.biorxiv.org/content/10.1101/2024.02.06.579092v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology
preLight: (not yet highlighted)
manuscript is published: (not yet)
Temporal dynamics of BMP/Nodal ratio drive tissue-specific gastrulation morphogenesis
https://www.biorxiv.org/content/10.1101/2024.02.06.579243v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Gastrulation, Morphogenesis, Convergent extension, Zebrafish, Nodal, BMP
preLight: (not yet highlighted)
manuscript is published: (not yet)
Drosophila Fog/Cta and T48 pathways have overlapping and distinct contributions to mesoderm invagination
https://www.biorxiv.org/content/10.1101/2024.02.02.578601v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mesoderm invagination, apical constriction
preLight: (not yet highlighted)
manuscript is published: (not yet)
Coupling and uncoupling of midline morphogenesis and cell flow in amniote gastrulation
https://www.biorxiv.org/content/10.1101/2023.05.26.542486v4
preLighter: (default)
writer: (you?)
keywords: Developmental biology, gastrulation, convergent extension movements
preLight: (not yet highlighted)
manuscript is published: (not yet)
A feather star is born: embryonic development and nervous system organization in the crinoid Antedon mediterranea
https://www.biorxiv.org/content/10.1101/2024.01.30.577964v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, echinoderm development, feather star, embryogenesis, nervous system, apical organ, skeletogenesis, Antedon mediterranea, evo-devo
preLight: (not yet highlighted)
manuscript is published: (not yet)
Hepatoblast iterative apicobasal polarization is regulated by extracellular matrix remodeling
https://www.biorxiv.org/content/10.1101/2024.01.30.578046v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mouse liver development, hepatoblast polarity, apical recycling endosome, extracellular matrix, integrins, metalloproteases
preLight: (not yet highlighted)
manuscript is published: (not yet)
PCP Auto Count: A Novel Fiji/ImageJ plug-in for automated quantification of planar cell polarity and cell counting
https://www.biorxiv.org/content/10.1101/2024.01.30.578047v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, image analysis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Occurrence of non-apical mitoses at the primitive streak, induced by relaxation of actomyosin and acceleration of the cell cycle, contributes to cell delamination during mouse gastrulation
https://www.biorxiv.org/content/10.1101/2024.01.24.577096v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mouse gastrulation, epithelial to mesenchymal transition
preLight: (not yet highlighted)
manuscript is published: (not yet)
PatternJ: an ImageJ toolset for the automated and quantitative analysis of regular spatial patterns found in sarcomeres, axons, somites, and more
https://www.biorxiv.org/content/10.1101/2024.01.17.576053v1
preLighter: (default)
writer: (you?)
keywords: Biophysics, image analysis
preLight: (not yet highlighted)
manuscript is published: (not yet)
The Lifeact-EGFP Quail: A New Avian Model For Studying Actin Dynamics In Vivo
https://www.biorxiv.org/content/10.1101/2023.11.19.567639v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, non-model organisms, transgenics
preLight: (not yet highlighted)
manuscript is published: (not yet)
Establishment of CRISPR/Cas9-based knock-in in a hemimetabolous insect: targeted gene tagging in the cricket Gryllus bimaculatus
https://www.biorxiv.org/content/10.1101/2021.05.10.441399v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, CRISPR/Cas9, Orthoptera, genome editing, Hox genes, Ultrabithorax, abdominal-A
preLight: (not yet highlighted)
manuscript is published: (not yet)
Glycolysis–Wnt signaling axis tunes developmental timing of embryo segmentation
https://www.biorxiv.org/content/10.1101/2024.01.22.576629v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, glycolysis, metabolism, Wnt signalling, segmentation
preLight: (not yet highlighted)
manuscript is published: (not yet)
A Clock and Wavefront Self-Organizing Model Recreates the Dynamics of Mouse Somitogenesis in-vivo and in-vitro
https://www.biorxiv.org/content/10.1101/2023.01.18.524516v3
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mouse somitogenesis, segmentation, clock and wavefront model, self organization, theoretical modelling
preLight: (not yet highlighted)
manuscript is published: (not yet)
Development and patterning of a highly versatile visual system in spiders
https://www.biorxiv.org/content/10.1101/2023.12.22.572789v3
preLighter: (default)
writer: (you?)
keywords: Developmental biology, development and patterning in spiders
preLight: (not yet highlighted)
manuscript is published: (not yet)
Mechanosensitive genomic enhancers potentiate the cellular response to matrix stiffness
https://www.biorxiv.org/content/10.1101/2024.01.10.574997v1
preLighter: (default)
writer: (you?)
keywords: Genomics
preLight: (not yet highlighted)
manuscript is published: (not yet)
Modularity of the segmentation clock and morphogenesis
https://www.biorxiv.org/content/10.1101/2024.01.08.574679v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, zebrafish, presomitic mesoderm, segmentation, computational model
preLight: (not yet highlighted)
manuscript is published: (not yet)
Single-cell transcriptional dynamics in a living vertebrate
https://www.biorxiv.org/content/10.1101/2024.01.03.574108v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, zebra fish, MS2, single-cell transcriptional readouts
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cooperation between Nodal and FGF signals regulates zebrafish cardiac cell migration and heart morphogenesis
https://www.biorxiv.org/content/10.1101/2024.01.05.574380v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, congenital heart defects, left-right asymmetry, cardiac looping, cardiac jogging, Nodal, FGF
preLight: (not yet highlighted)
manuscript is published: (not yet)
A revised single-cell transcriptomic atlas of Xenopus embryo reveals new differentiation dynamics
https://www.biorxiv.org/content/10.1101/2024.01.02.573882v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cell density couples tissue mechanics to control the elongation speed of the body axis
https://www.biorxiv.org/content/10.1101/2023.12.31.573670v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, segmentation, presomitic mesoderm, cell density, FGF signalling
preLight: (not yet highlighted)
manuscript is published: (not yet)
Learning a conserved mechanism for early neuroectoderm morphogenesis
https://www.biorxiv.org/content/10.1101/2023.12.22.573058v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, BMP/Dpp signalling, morphogenesis, machine learning, morphodynamic atlas, Drosophila melanogaster
preLight: (not yet highlighted)
manuscript is published: (not yet)
Apical constriction requires patterned apical surface remodeling to synchronize cellular deformation
https://www.biorxiv.org/content/10.1101/2023.12.19.572310v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, tissue folding, endocytosis, mechanical modelling
preLight: (not yet highlighted)
manuscript is published: (not yet)
Live-imaging reveals Coordinated Cell Migration and Cardiac Fate Determination during Mammalian Gastrulation
https://www.biorxiv.org/content/10.1101/2023.12.19.572445v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, heart development, cardiac progenitor live imaging, mouse embryo
preLight: (not yet highlighted)
manuscript is published: (not yet)
EGFR-dependent actomyosin patterning coordinates morphogenetic movements between tissues
https://www.biorxiv.org/content/10.1101/2023.12.22.573057v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mesoderm, ectoderm, cell adhesion, E-cadherin, EGFR signalling, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Elasto-Plastic Transition in Epithelial Folding
https://www.biorxiv.org/content/10.1101/2023.12.19.572470v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, tissue folding, EGFR signalling, epithelial-to-mesenchymal transition, epithelial cell culture
preLight: (not yet highlighted)
manuscript is published: (not yet)
Natural reversal of cavefish heart asymmetry is controlled by Sonic Hedgehog effects on the left-right organizer
https://www.biorxiv.org/content/10.1101/2023.12.13.571559v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, cavefish, heart asymmetry, Sonic Hedgehog, left-right organizer, dand5 asymmetry
preLight: (not yet highlighted)
manuscript is published: (not yet)
Physical constraints during Snowball Earth drive the evolution of multicellularity
https://www.biorxiv.org/content/10.1101/2023.12.07.570654v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, evolution of multicellularity, molecular and fossil data
preLight: (not yet highlighted)
manuscript is published: (not yet)
Spectral decomposition unlocks ascidian morphogenesis
https://www.biorxiv.org/content/10.1101/2023.08.22.554368v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mechanical modelling, ascidian embryonic morphogenesis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Mechanical strengthening of cell-cell adhesion during mouse embryo compaction
https://www.biorxiv.org/content/10.1101/2023.12.07.570568v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, embryo compaction, cell adhesion, E-cadherin, dual pipette aspiration assay, mouse embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
A temporal allocation of amino acid resources ensures fitness and body allometry
https://www.biorxiv.org/content/10.1101/2023.12.08.570599v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, nutrition, growth, allometry, hexamerin, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Revisiting bicoid function: complete inactivation reveals an additional fundamental role in Drosophila egg geometry specification
https://www.biorxiv.org/content/10.1101/2023.12.08.570753v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, bicoid, CRISPR, embryo geometry, Drosophila melanogster
preLight: (not yet highlighted)
manuscript is published: (not yet)
Integrated Molecular-Phenotypic Profiling Reveals Metabolic Control of Morphological Variation in Stembryos
https://www.biorxiv.org/content/10.1101/2023.12.04.569921v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, embryo models, gastruloids, morphospace, glycolysis, oxidative phosphorylation, singlecell RNA-seq, machine learning, neuro-mesodermal progenitors, somitogenesis, organoids
preLight: (not yet highlighted)
manuscript is published: (not yet)
Fluctuating temperatures exacerbate the effects of nutritional stress during development in Drosophila melanogaster
https://www.biorxiv.org/content/10.1101/2023.11.28.569099v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Temperature, Nutrition, Local Adaptation, Diel Cycles, Climate Change, Development, Drosophila melanogaster
preLight: (not yet highlighted)
manuscript is published: (not yet)
A mechanical atlas for Ascidian gastrulation
https://www.biorxiv.org/content/10.1101/2022.11.05.515310v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mechanical modelling, force inference techniques, Phallusia mammillata
preLight: (not yet highlighted)
manuscript is published: (not yet)
Modelling variability and heterogeneity of EMT scenarios highlights nuclear positioning and protrusions as main drivers of extrusion
https://www.biorxiv.org/content/10.1101/2023.11.17.567510v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, EMT, nuclear positioning
preLight: (not yet highlighted)
manuscript is published: (not yet)
Long-term cold selection leads to increased thermal plasticity of male body size and thermal canalization of fecundity in Drosophila melanogaster
https://www.biorxiv.org/content/10.1101/2023.11.13.566815v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Thermal plasticity, Thermal adaptation, Experimental evolution, Fecundity, Body size, Canalization, Drosophila melanogaster
preLight: (not yet highlighted)
manuscript is published: (not yet)
Intrinsic self-organization of integrin nanoclusters within focal adhesions is required for cellular mechanotransduction
https://www.biorxiv.org/content/10.1101/2023.11.20.567975v1
preLighter: (default)
writer: (you?)
keywords: Cell biology, Integrins, nanoclustering, mechanotransduction, mouse embryonic fibroblasts
preLight: (not yet highlighted)
manuscript is published: (not yet)
Nonlinear readout of spatial cues underlies robustness of asymmetric cell division
https://www.biorxiv.org/content/10.1101/2023.11.21.568006v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, dosage compensation, robustness, canalization, asymmetric cell division, cell polarity, PAR proteins, C. elegans
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cadherins modulate the self-organizing potential of gastruloids
https://www.biorxiv.org/content/10.1101/2023.11.22.568291v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Self-organization, EMT, Pluripotency, Gastruloids, Snai1, Chromatin, Somitogenesis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Membrane potential mediates an ancient mechano-transduction mechanism for multi-cellular homeostasis
https://www.biorxiv.org/content/10.1101/2023.11.02.565386v1
preLighter: (default)
writer: (you?)
keywords: Cell biology, membrane potential, mechanosensing, tissue density
preLight: (not yet highlighted)
manuscript is published: (not yet)
Exposure to Pseudomonas spp. increases Anopheles gambiae insecticide resistance in a population-dependent manner
https://www.biorxiv.org/content/10.1101/2023.11.13.565999v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, insecticide resistance, Pseudomonas, anopheles gambiae
preLight: (not yet highlighted)
manuscript is published: (not yet)
Planar polarized force propagation integrates cell behavior with tissue shaping during convergent extension
https://www.biorxiv.org/content/10.1101/2022.11.08.515701v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, planar cell polarity, convergent extension movements, force inference, chick embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
Experimental evolution of multicellularity via cuboidal cell packing in fission yeast
https://www.biorxiv.org/content/10.1101/2023.11.03.565576v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, multicellularity, cuboidal packing, convergent evolution, Schizosaccharomyces pombe
preLight: (not yet highlighted)
manuscript is published: (not yet)
New tools reveal PCP-dependent polarized mechanics in the cortex and cytoplasm of single cells during convergent extension
https://www.biorxiv.org/content/10.1101/2023.11.07.566066v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, planar cell polarity, convergent extension movements, force inference
preLight: (not yet highlighted)
manuscript is published: (not yet)
Change in RhoGAP and RhoGEF availability drives transitions in cortical patterning and excitability in Drosophila
https://www.biorxiv.org/content/10.1101/2023.11.06.565883v1
preLighter: (default)
writer: (you?)
keywords: Cell biology, RhoA, actomyosin cortex, excitability, development, Drosophila egg chamber, Drosophila embryo
preLight: (not yet highlighted)
manuscript is published: (not yet)
Allometry of cell types in planarians by single cell transcriptomics
https://www.biorxiv.org/content/10.1101/2023.11.01.565140v1
preLighter: (default)
writer: (you?)
keywords: Systems biology, allometry, single cell RNA-seq, Planarians
preLight: (not yet highlighted)
manuscript is published: (not yet)
Sea anemone MACPF proteins demonstrate an evolutionary transitional state between venomous and developmental functions
https://www.biorxiv.org/content/10.1101/2023.10.30.564692v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, venom proteins, novel function during development, Nematostella vectensis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Nuclear deformation and dynamics of migrating cells in 3D confinement reveal adaptation of pulling and pushing forces
https://www.biorxiv.org/content/10.1101/2023.10.30.564765v1
preLighter: (default)
writer: (you?)
keywords: Biophysics, mechanosensitivity, Nucleus, Confined Migration, Invasion, Cytoskeleton, Mechanobiology, Confinement Adaptation
preLight: (not yet highlighted)
manuscript is published: (not yet)
Hsp90 shapes adaptation by controlling the fitness consequences of regulatory variation
https://www.biorxiv.org/content/10.1101/2023.10.30.564848v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Hsp90, genetic variability, evolutionary selection, adaptation, Saccharomyces cerevisiae
preLight: (not yet highlighted)
manuscript is published: (not yet)
Atypical Protein Kinase C Promotes its own Asymmetric Localisation by Phosphorylating Cdc42 in Polarising Cells
https://www.biorxiv.org/content/10.1101/2023.10.27.563985v1
preLighter: (default)
writer: (you?)
keywords: Cell biology, asymmetric cell division, cell polarity, cell patterning, embryo axis, PAR proteins, atypical protein kinase C (aPKC), membrane protein complex dynamics, aPKC self-regulatory feedback, actomyosin cortex dynamics, phosphoregulation of CDC-42
preLight: (not yet highlighted)
manuscript is published: (not yet)
Rapid life-history evolution reinforces competitive asymmetry between invasive and resident species
https://www.biorxiv.org/content/10.1101/2023.10.25.563987v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, invasion, competition, asymmetry, character displacement, laboratory, freshwater snails
preLight: (not yet highlighted)
manuscript is published: (not yet)
Widespread regulation of the maternal transcriptome by Nanos in Drosophila
https://www.biorxiv.org/content/10.1101/2023.08.28.555109v3
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Nanos, abdominal segmentation, embryonic patterning, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Zbtb11 interacts with Otx2 and patterns the anterior neuroectoderm in Xenopus
https://www.biorxiv.org/content/10.1101/2023.10.20.563376v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Anterior neuroectoderm, patterning, zinc finger, Xenopus
preLight: (not yet highlighted)
manuscript is published: (not yet)
Ecdysone Orchestrates Notch and Broad Symphony to Craft Epithelial Cell Shape Change
https://www.biorxiv.org/content/10.1101/2023.10.20.563225v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Anterior Follicle cells, EcR, Drosophila oogenesis, Notch, Broad-complex, Zipper
preLight: (not yet highlighted)
manuscript is published: (not yet)
PDZ Domains from the Junctional Proteins Afadin and ZO-1 Act as Mechanosensors
https://www.biorxiv.org/content/10.1101/2023.09.24.559210v2
preLighter: (default)
writer: (you?)
keywords: Biophysics, mechanosensitivity, cell-cell adhesion, catch-bonds, Afadin, ZO-1, PDZ domain, cytoskeleton, magnetic tweezers
preLight: (not yet highlighted)
manuscript is published: (not yet)
Continuously fluctuating selection reveals extreme granularity and parallelism of adaptive tracking
https://www.biorxiv.org/content/10.1101/2023.10.16.562586v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, adaptative tracking, standing genetic variation, common garden experiments, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Genomic Diversity Illuminates the Environmental Adaptation of Drosophila suzukii
https://www.biorxiv.org/content/10.1101/2023.07.03.547576v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, environmental adaptation, genotype-environment association, invasion genomics, Drosophila suzukii
preLight: (not yet highlighted)
manuscript is published: (not yet)
Two distinct waves of transcriptome and translatome remodelling drive germline stem cell differentiation
https://www.biorxiv.org/content/10.1101/2023.05.14.540555v3
preLighter: (default)
writer: (you?)
keywords: Developmental biology, germline stem cells, translation efficiency, transcriptome, translatome, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Dynamic Hippo pathway activity underlies mesenchymal differentiation during lung alveolar morphogenesis
https://www.biorxiv.org/content/10.1101/2023.10.17.561252v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Hippo pathway, lung alveolar morphogenesis, bulk RNA sequencing, mouse model
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cut it out: Out-of-plane stresses in cell sheet folding of Volvox embryos
https://www.biorxiv.org/content/10.1101/2023.10.17.562736v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, cell sheet folding, tissue elasticity, volvox, non-model species
preLight: (not yet highlighted)
manuscript is published: (not yet)
A morphogenic cascade emerges from the co-evolution of spheroid fluidization and fracturing of multicellular barriers
https://www.biorxiv.org/content/10.1101/2023.09.25.559247v3
preLighter: (default)
writer: (you?)
keywords: Cell biology, solid-to-fluid-like transition, cancer spheroid invading mesothelium, tissue fracture and fluidisation, 3D cell culture
preLight: (not yet highlighted)
manuscript is published: (not yet)
Modeling the roles of cohesotaxis, cell-intercalation, and tissue geometry in collective cell migration of Xenopus mesendoderm
https://www.biorxiv.org/content/10.1101/2023.10.16.562601v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Gastrulation, Agent-Based Model, Tissue Morphogenesis, CompuCell3D, Mechanobiology, Emergent Property
preLight: (not yet highlighted)
manuscript is published: (not yet)
Temporal restriction of RNAi reveals breakdown of the segmentation clock is reversible after knock down of primary pair rule genes but not Wnt-signaling in the red flour beetle
https://www.biorxiv.org/content/10.1101/2023.10.15.562380v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Embryogenesis, Insect segmentation, clock and wavefront/speed gradient model, segmentation breakdown, RNAi, transgenic tool, red flour beetle
preLight: (not yet highlighted)
manuscript is published: (not yet)
Adaptive genomic variation is linked to a climatic gradient in a social wasp
https://www.biorxiv.org/content/10.1101/2023.10.12.561994v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, climatic gradient, genomic variation, genotype-environment associations, local adaptation, Mischocyttarus mexicanus, social wasp
preLight: (not yet highlighted)
manuscript is published: (not yet)
Tropical high-altitude insects show limited capacity to handle high temperatures
https://www.biorxiv.org/content/10.1101/2022.09.10.507406v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Heat, Climate change, Rapid adaptation, High altitudes, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Scale-independent topological interactions drive the first fate decision in the Drosophila embryo
https://www.biorxiv.org/content/10.1101/2023.10.11.561879v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Embryogenesis, Spindle orientation, Nuclear fate, Microtubule structures, Cell fate determination, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Vinculin Antagonizes Branched Actin in Controlling Membrane Protrusion, Cell Migration and Cell Cycle Progression
https://www.biorxiv.org/content/10.1101/2023.10.09.561480v2
preLighter: (default)
writer: (you?)
keywords: Cell biology, Vinculin, Mechanotransducer, Cell adhesions, Arp2/3, Actin networks, Migration, Cell-cell junctions
preLight: (not yet highlighted)
manuscript is published: (not yet)
Visualisation of gene expression within the context of tissues: an X-ray computed tomography-based multimodal approach
https://www.biorxiv.org/content/10.1101/2023.10.09.561491v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, multimodal labelling, X-ray computed-tomography, light sheet microscopy, in situ hybridisation, immunofluorescence, rice fish (medaka), organoids
preLight: (not yet highlighted)
manuscript is published: (not yet)
Quantitative proteome dynamics across embryogenesis in a model chordate
https://www.biorxiv.org/content/10.1101/2023.10.04.559613v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Evolution, gene expression programs, vertebrates, proteome atlas, developmental stages, multi-omics analysis, Transcriptome, Chordates, Vertebrates, Ciona, Xenopus
preLight: (not yet highlighted)
manuscript is published: (not yet)
Segmentation in tapeworms as a modified form of flatworm posterior regeneration involving Wnt and Hedgehog signalling
https://www.biorxiv.org/content/10.1101/2023.10.02.560491v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, segmentation, anteroposterior patterning, regeneration, tapeworm, Wnt, Hedgehog
preLight: (not yet highlighted)
manuscript is published: (not yet)
Local Thermal Adaptation occurs via Modulation of Mitochondrial Activity in Chinook Salmon
https://www.biorxiv.org/content/10.1101/2023.09.28.560008v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Thermal Adaptation, Mitochondria, metabolism, non-model species
preLight: (not yet highlighted)
manuscript is published: (not yet)
Open top multi sample dual view light sheet microscope for live imaging of large multicellular systems
https://www.biorxiv.org/content/10.1101/2023.09.28.559925v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, light sheet microscopy, high content microscopy, intestinal organoids, gastruloids, live imaging, new imaging techniques
preLight: (not yet highlighted)
manuscript is published: (not yet)
Myocardin-related transcription factors regulate morphogenetic events in vertebrate embryos by controlling F-actin organization and apical constriction
https://www.biorxiv.org/content/10.1101/2023.09.27.559818v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Mrtf, serum response factor, morphogenesis, gastrulation, megakaryoblastic leukemia, Mkl, F-actin, Xenopus embryo, apical constriction, blastopore, neural tube closure, tricellular junctions
preLight: (not yet highlighted)
manuscript is published: (not yet)
Notch signalling plays a critical role in patterning the ventral mesoderm during early embryogenesis in Drosophila melanogaster
https://www.biorxiv.org/content/10.1101/2023.09.27.558900v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Notch signalling, Drosophila, mesoderm, morphogenesis, dorso-ventral patterning
preLight: (not yet highlighted)
manuscript is published: (not yet)
Transcriptome analysis reveals temporally regulated genetic networks during Drosophila border cell collective migration
https://www.biorxiv.org/content/10.1101/2023.09.27.559830v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Collective cell migration, oogenesis, adhesion, morphogenesis, ribosome, RNA-seq, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cell proliferation and Notch signaling coordinate the formation of epithelial folds in the Drosophila leg
https://www.biorxiv.org/content/10.1101/2023.09.28.559944v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Notch signalling, cell proliferation, morphogenesis, epithelia, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Embryogenesis in myrmicine ants combines features of short and long germ-band modes of development
https://www.biorxiv.org/content/10.1101/2023.09.19.557849v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, morphogenesis, embryogenesis, segmental patterning, development in non-model organisms, ant species, Hymenoptera
preLight: (not yet highlighted)
manuscript is published: (not yet)
Sensitivity of the timing of Drosophila pupal wing morphogenesis to external perturbations
https://www.biorxiv.org/content/10.1101/2023.09.22.558969v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, morphogenesis, Drosophila, pupal wing
preLight: (not yet highlighted)
manuscript is published: (not yet)
Strong environmental memory revealed by experimental evolution in static and fluctuating environments
https://www.biorxiv.org/content/10.1101/2023.09.14.557739v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, laboratory evolution, barcoded yeast lineages, non-additive effects, environmental memory
preLight: (not yet highlighted)
manuscript is published: (not yet)
GC content across insect genomes: phylogenetic patterns, causes and consequences
https://www.biorxiv.org/content/10.1101/2023.09.11.557135v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, GC content, phylogenetic patterns, genome biology, coding region
preLight: (not yet highlighted)
manuscript is published: (not yet)
An actomyosin network organizes niche morphology and responds to feedback from recruited stem cells
https://www.biorxiv.org/content/10.1101/2023.09.08.556877v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, morphogenesis, Drosophila, actomyosin networks, stem cells to niche feedback
preLight: (not yet highlighted)
manuscript is published: (not yet)
Conserved nucleocytoplasmic density homeostasis drives cellular organization across eukaryotes
https://www.biorxiv.org/content/10.1101/2023.09.05.556409v1
preLighter: (default)
writer: (you?)
keywords: Biophysics, nucleoplasm and cytoplasm density, nuclear-to-cytoplasmic ratio, C. elegans, label-free biophotonics, theory
preLight: (not yet highlighted)
manuscript is published: (not yet)
Genetic basis of variation in thermal developmental plasticity for Drosophila melanogaster body pigmentation
https://www.biorxiv.org/content/10.1101/2023.09.03.556093v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, developmental plasticity; thermal melanism; insect coloration; Genome-Wide Association Study (GWAS); Drosophila Genetic Reference Panel (DGRP); seasonal variation
preLight: (not yet highlighted)
manuscript is published: (not yet)
Mechanosensing through talin 1 contributes to tissue mechanical homeostasis
https://www.biorxiv.org/content/10.1101/2023.09.03.556084v2
preLighter: (default)
writer: (you?)
keywords: Cell biology, mechanosensing, tissue mechanical homeostasis, talin, cell-ECM interactions
preLight: (not yet highlighted)
manuscript is published: (not yet)
Immigration delays but does not prevent adaptation following environmental change: experimental evidence
https://www.biorxiv.org/content/10.1101/2023.08.31.555763v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, natural selection, evolutionary rescue, dispersal, Tribolium castaneum, gene flow, translocation
preLight: (not yet highlighted)
manuscript is published: (not yet)
Modular control of time and space during vertebrate axis segmentation
https://www.biorxiv.org/content/10.1101/2023.08.30.555457v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, rice fish (medaka), segmentation tempo, developmental time, developmental constraints, QTL, CRISPR/Cas9, genetic hybridization, scaling
preLight: (not yet highlighted)
manuscript is published: (not yet)
Prickle and Ror modulate Dishevelled-Vangl interaction to regulate non-canonical Wnt signaling during convergent extension
https://www.biorxiv.org/content/10.1101/2023.08.29.555374v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, convergent extension, planar cell polarity, non-canonical wnt signalling, Xenopus embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
Insights into Digit Evolution from a Fate Map Study of the Forearm
https://www.biorxiv.org/content/10.1101/2023.08.29.555165v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, digit evolution, morphogenesis, chicken embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
Morphogen gradients can convey position and time in growing tissues
https://www.biorxiv.org/content/10.1101/2023.08.28.555133v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, tissue patterning, morphogen gradient, time, opposing gradients, neural tube, Sonic hedgehog
preLight: (not yet highlighted)
manuscript is published: (not yet)
Morphodynamics of human early brain organoid development
https://www.biorxiv.org/content/10.1101/2023.08.21.553827v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, brain organoid, light sheet microscopy, single-cell transcriptome, mechanosensing
preLight: (not yet highlighted)
manuscript is published: (not yet)
Nucleotide sharing through gap junctions buffers replication stress
https://www.biorxiv.org/content/10.1101/2023.08.15.553366v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, gap junctions, metabolism, replication stress, stem cells
preLight: (not yet highlighted)
manuscript is published: (not yet)
Successful regeneration of the adult zebrafish retina is dependent on inflammatory signaling
https://www.biorxiv.org/content/10.1101/2023.08.11.552956v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, immune suppression, M-CSF, microglia, Müller glia, NF-κB pathway, retina regeneration, zebrafish
preLight: (not yet highlighted)
manuscript is published: (not yet)
The cell adhesion molecule Echinoid promotes tissue survival and separately restricts tissue overgrowth in Drosophila imaginal discs
https://www.biorxiv.org/content/10.1101/2023.08.04.552072v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, echinoid, hippo-pathway, tissue growth regulation, Drosophila imaginal discs
preLight: (not yet highlighted)
manuscript is published: (not yet)
Investigating the phylogenetic history of toxin tolerance in mushroom-feeding Drosophila
https://www.biorxiv.org/content/10.1101/2023.08.03.551872v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Ancestral state reconstruction, Amanita mushrooms, phylogenetics, mycophagy, biochemical novelty, toxin tolerance
preLight: (not yet highlighted)
manuscript is published: (not yet)
Scaling between cell cycle duration and wing growth is regulated by Fat-Dachsous signaling in Drosophila
https://www.biorxiv.org/content/10.1101/2023.08.01.551465v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Fat-Dachsous, hippo-pathway, tissue growth regulation, Drosophila wing
preLight: (not yet highlighted)
manuscript is published: (not yet)
Conserved and novel enhancers regulate expression of Aedes aegypti single-minded in the embryonic ventral midline
https://www.biorxiv.org/content/10.1101/2023.08.01.551414v2
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, enhancer evolution, single minded, nervous system master regulator, embryo development, Aedes aegypti, Drosophila melanogaster,
preLight: (not yet highlighted)
manuscript is published: (not yet)
Global decoupling of cell differentiation from cell division in early embryo development
https://www.biorxiv.org/content/10.1101/2023.07.29.551123v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, cell division, cell differentiation, embryo development, single-cell RNAseq, zebrafish
preLight: (not yet highlighted)
manuscript is published: (not yet)
Growth directions and stiffness across cell layers determine whether tissues stay smooth or buckle
https://www.biorxiv.org/content/10.1101/2023.07.22.549953v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, tissue growth regulation, tissue interactions, growth direction, tissue stiffness, Arabidopsis
preLight: (not yet highlighted)
manuscript is published: (not yet)
BMP-dependent patterning of ectoderm tissue material properties modulates lateral mesendoderm cell migration during early zebrafish gastrulation
https://www.biorxiv.org/content/10.1101/2023.07.21.550024v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, gastrulation, tissue material properties, embryo development, zebrafish
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cell division angle regulates the tissue mechanics and tunes the amount of cerebellar folding
https://www.biorxiv.org/content/10.1101/2023.07.21.549165v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, cerebellum, brain folding, cell division angle, tissue mechanics, mouse models
preLight: (not yet highlighted)
manuscript is published: (not yet)
Ran-GTP assembles a specialized spindle structure for accurate chromosome segregation in medaka early embryos
https://www.biorxiv.org/content/10.1101/2023.07.20.549960v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, mitotic spindle, chromosome segregation defects, CRISPR knock-in, rice fish (medaka)
preLight: (not yet highlighted)
manuscript is published: (not yet)
Coordination of cell cycle and morphogenesis during organ formation
https://www.biorxiv.org/content/10.1101/2023.07.20.549944v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, salivary gland, Huckebein, endoreplication, endocycle, apoptosis, epithelial tube formation, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Drosophila axis extension is robust to an orthogonal pull by invaginating mesoderm
https://www.biorxiv.org/content/10.1101/2023.07.18.549479v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Mechanical interactions; germband extension; actomyosin cortex; planar polarity; cell neighbour exchanges; convergent extension; live imaging; cell tracking; gastrulation, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Amphibian segmentation clock models suggest mechanisms of slowed development across increasing genome size and nuclear volume
https://www.biorxiv.org/content/10.1101/2023.07.16.549220v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, Somitogenesis, cell size, genomic expansion, intron delay, gene expression kinetics, nucleoplasmic diffusion, Xenopus laevis and Ambystoma mexicanum
preLight: (not yet highlighted)
manuscript is published: (not yet)
Evolution of compound eye morphology underlies differences in vision between closely related Drosophila species
https://www.biorxiv.org/content/10.1101/2023.07.16.549164v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, eye structure and vision, 3D synchrotron radiation tomography, optomotor response tracking, Drosophila mauritiana and simulans
preLight: (not yet highlighted)
manuscript is published: (not yet)
Tissue tension permits β-catenin phosphorylation to drive mesoderm specification in human embryonic stem cells
https://www.biorxiv.org/content/10.1101/2023.07.14.549074v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, gastrulation, mechanical forces, β-catenin, mesoderm specification, Wnt signaling, human embryonic stem cells, cytoskeletal tension, mechanotransduction, gastruloids, traction force microscopy (TFM)
preLight: (not yet highlighted)
manuscript is published: (not yet)
Naturally segregating genetic variants contribute to thermal tolerance in a D. melanogaster model system
https://www.biorxiv.org/content/10.1101/2023.07.06.547110v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, QTL, Thermal Tolerance, DSPR, RNA-seq, Gene Expression, RNAi, Complex Traits, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Cracked actin filaments as mechanosensitive receptors
https://www.biorxiv.org/content/10.1101/2023.06.26.546553v1
preLighter: (default)
writer: (you?)
keywords: Biophysics, molecular dynamics simulations, F-actin filaments under tensile strain
preLight: (not yet highlighted)
manuscript is published: (not yet)
Patterning and folding of intestinal villi by active mesenchymal dewetting
https://www.biorxiv.org/content/10.1101/2023.06.25.546328v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, tissue folding, intestinal epithelium, tissue interactions, single-cell RNAseq, mouse model
preLight: (not yet highlighted)
manuscript is published: (not yet)
A cytokinetic ring-driven cell rotation achieves Hertwig’s rule in early development
https://www.biorxiv.org/content/10.1101/2023.06.23.546115v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, cell division, theoretical model, actomyosin contractility, C. elegans
preLight: (not yet highlighted)
manuscript is published: (not yet)
Evolution of Plasticity in Response to Ethanol between Recently Separated Populations of D. melanogaster with Different Ecological Histories
https://www.biorxiv.org/content/10.1101/2023.06.22.546145v1
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, phenotypic plasticity, ethanol metabolism, adaptation, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Distinctive cellular and junctional dynamics independently regulate the rotation and elongation of the internal organ
https://www.biorxiv.org/content/10.1101/2023.05.22.541825v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, chiral cell-sliding, cell-intercalation, gut tube rotation, left-right asymmetry, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Apical-driven cell sorting optimised for tissue geometry ensures robust patterning
https://www.biorxiv.org/content/10.1101/2023.05.16.540918v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, fate segregation, cell mechanics, cell sorting, cell migration, apical polarity, extracellular matrix, tissue geometry, embryo patterning, robustness, morphogenesis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Dissecting genetic correlation through recombinant perturbations: the role of developmental bias
https://www.biorxiv.org/content/10.1101/2023.05.12.540583v4
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, Genetics, Pleiotropy; Genetic correlation; Developmental bias; Evolvability
preLight: (not yet highlighted)
manuscript is published: (not yet)
Regeneration from three cellular sources and ectopic mini-retina formation upon neurotoxic retinal degeneration in Xenopus
https://www.biorxiv.org/content/10.1101/2023.05.12.540545v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, retina, photoreceptor degeneration, cobalt chloride, regeneration, Müller glia, ciliary marginal zone, retinal pigmented epithelium, Xenopus laevis, Xenopus tropicalis
preLight: (not yet highlighted)
manuscript is published: (not yet)
Hypoxia delays steroid-induced developmental maturation in Drosophila by suppressing EGF signaling
https://www.biorxiv.org/content/10.1101/2023.05.12.540517v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, development in hypoxia, ecdysone signalling, EGFR signalling, Drosophila larvae
preLight: (not yet highlighted)
manuscript is published: (not yet)
Inverse blebs operate as hydraulic pumps during mouse blastocyst formation
https://www.biorxiv.org/content/10.1101/2023.05.03.539105v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, lumen formation, fluid pressure, cell adhesion, mouse embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
RhoA GEF Mcf2lb regulates rosette integrity during collective cell migration
https://www.biorxiv.org/content/10.1101/2023.04.19.537573v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, collective cell migration, posterior lateral line, cell contractility, zebrafish
preLight: (not yet highlighted)
manuscript is published: (not yet)
Bitesize bundles F-actin and influences actin remodeling in syncytial Drosophila embryo development
https://www.biorxiv.org/content/10.1101/2023.04.17.537198v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, syncytial divisions, F-actin regulation, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Evolutionarily conserved role of serotonin signaling in regulating actomyosin contractility during morphogenesis
https://www.biorxiv.org/content/10.1101/2023.04.12.535044v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, serotonin signalling, actomyosin contractility regulation, GPCR signalling, gastrulation, Fly and Chicken embryos
preLight: (not yet highlighted)
manuscript is published: (not yet)
Mitochondrial morphology dynamics and ROS regulate apical polarity and differentiation in Drosophila follicle cells
https://www.biorxiv.org/content/10.1101/2023.03.10.532033v1
preLighter: (default)
writer: (you?)
keywords: Developmental biology, epithelial polarity, mitochondria, ROS, aPKC, Drp1, Opa1, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Desmosome-anchored intermediate filaments facilitate tension-sensitive RhoA signaling for epithelial homeostasis
https://www.biorxiv.org/content/10.1101/2023.02.23.529786v1
preLighter: (default)
writer: (you?)
keywords: Cell biology, Epithelia, Mechanotransduction, Desmoplakin, Intermediate Filaments, RhoA
preLight: (not yet highlighted)
manuscript is published: (not yet)
Geographic variation of the for gene reveals signatures of local adaptation in Drosophila melanogaster
https://www.biorxiv.org/content/10.1101/2023.02.19.529142v3
preLighter: (default)
writer: (you?)
keywords: Evolutionary biology, foraging mode, landscape genetics, polymorphism, heterogeneous environments, path length, Drosophila
preLight: (not yet highlighted)
manuscript is published: (not yet)
Planarians employ diverse and dynamic stem cell microenvironments to support whole-body regeneration
https://www.biorxiv.org/content/10.1101/2022.03.20.485025v4
preLighter: Girish Kale (profile)
writer: Rebecca Kern
keywords: Developmental biology, planarians, regeneration, slide-seqv2, stem cell niche
preLight: When it comes to planarian stem cells, it’s not a one-niche-fits-all situation.
manuscript is published: ?
PCP and Septins govern the polarized organization of the actin cytoskeleton during convergent extension
https://www.biorxiv.org/content/10.1101/2022.06.06.495000v2
preLighter: (default)
writer: (you?)
keywords: Developmental biology, morphogenesis, planar cell polarity, Septin, actin cytoskeleton, convergent extension, Xenopus
preLight: (not yet highlighted)
manuscript is published: (not yet)
Categories: biophysics , cell biology , developmental biology , evolutionary biology , genomics
Posted on: 29 September 2023 , updated on: 17 February 2024
Sign up to customise the site to your preferences and to receive alerts
Register hereAlso in the biophysics category:
66th Biophysical Society Annual Meeting, 2022
Preprints presented at the 66th BPS Annual Meeting, Feb 19 - 23, 2022 (The below list is not exhaustive and the preprints are listed in no particular order.)
List by | Soni Mohapatra |
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
List by | Alex Eve |
Biophysical Society Meeting 2020
Some preprints presented at the Biophysical Society Meeting 2020 in San Diego, USA.
List by | Tessa Sinnige |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
List by | Madhuja Samaddar et al. |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
List by | Dey Lab |
Biomolecular NMR
Preprints related to the application and development of biomolecular NMR spectroscopy
List by | Reid Alderson |
Biophysical Society Annual Meeting 2019
Few of the preprints that were discussed in the recent BPS annual meeting at Baltimore, USA
List by | Joseph Jose Thottacherry |
Also in the cell biology category:
BSCB-Biochemical Society 2024 Cell Migration meeting
This preList features preprints that were discussed and presented during the BSCB-Biochemical Society 2024 Cell Migration meeting in Birmingham, UK in April 2024. Kindly put together by Sara Morais da Silva, Reviews Editor at Journal of Cell Science.
List by | Reinier Prosee |
‘In preprints’ from Development 2022-2023
A list of the preprints featured in Development's 'In preprints' articles between 2022-2023
List by | Alex Eve, Katherine Brown |
preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by | preLights peer support |
The Society for Developmental Biology 82nd Annual Meeting
This preList is made up of the preprints discussed during the Society for Developmental Biology 82nd Annual Meeting that took place in Chicago in July 2023.
List by | Joyce Yu, Katherine Brown |
CSHL 87th Symposium: Stem Cells
Preprints mentioned by speakers at the #CSHLsymp23
List by | Alex Eve |
Journal of Cell Science meeting ‘Imaging Cell Dynamics’
This preList highlights the preprints discussed at the JCS meeting 'Imaging Cell Dynamics'. The meeting was held from 14 - 17 May 2023 in Lisbon, Portugal and was organised by Erika Holzbaur, Jennifer Lippincott-Schwartz, Rob Parton and Michael Way.
List by | Helen Zenner |
9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
Alumni picks – preLights 5th Birthday
This preList contains preprints that were picked and highlighted by preLights Alumni - an initiative that was set up to mark preLights 5th birthday. More entries will follow throughout February and March 2023.
List by | Sergio Menchero et al. |
CellBio 2022 – An ASCB/EMBO Meeting
This preLists features preprints that were discussed and presented during the CellBio 2022 meeting in Washington, DC in December 2022.
List by | Nadja Hümpfer et al. |
Fibroblasts
The advances in fibroblast biology preList explores the recent discoveries and preprints of the fibroblast world. Get ready to immerse yourself with this list created for fibroblasts aficionados and lovers, and beyond. Here, my goal is to include preprints of fibroblast biology, heterogeneity, fate, extracellular matrix, behavior, topography, single-cell atlases, spatial transcriptomics, and their matrix!
List by | Osvaldo Contreras |
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
List by | Alex Eve |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
List by | Ana Dorrego-Rivas |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
List by | Ana Dorrego-Rivas |
BioMalPar XVI: Biology and Pathology of the Malaria Parasite
[under construction] Preprints presented at the (fully virtual) EMBL BioMalPar XVI, 17-18 May 2020 #emblmalaria
List by | Dey Lab, Samantha Seah |
1
Cell Polarity
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
List by | Yamini Ravichandran |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by | Maiko Kitaoka et al. |
3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Updated until July 2021.
List by | Paul Gerald L. Sanchez and Stefano Vianello |
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
List by | Hiral Shah |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
List by | Madhuja Samaddar et al. |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
List by | Dey Lab |
Autophagy
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
List by | Sandra Malmgren Hill |
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
List by | Rob Hynds |
Cellular metabolism
A curated list of preprints related to cellular metabolism at Biorxiv by Pablo Ranea Robles from the Prelights community. Special interest on lipid metabolism, peroxisomes and mitochondria.
List by | Pablo Ranea Robles |
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
List by | Dey Lab |
MitoList
This list of preprints is focused on work expanding our knowledge on mitochondria in any organism, tissue or cell type, from the normal biology to the pathology.
List by | Sandra Franco Iborra |
ASCB/EMBO Annual Meeting 2018
This list relates to preprints that were discussed at the recent ASCB conference.
List by | Dey Lab, Amanda Haage |
Also in the developmental biology category:
BSDB/GenSoc Spring Meeting 2024
A list of preprints highlighted at the British Society for Developmental Biology and Genetics Society joint Spring meeting 2024 at Warwick, UK.
List by | Joyce Yu, Katherine Brown |
GfE/ DSDB meeting 2024
This preList highlights the preprints discussed at the 2024 joint German and Dutch developmental biology societies meeting that took place in March 2024 in Osnabrück, Germany.
List by | Joyce Yu |
‘In preprints’ from Development 2022-2023
A list of the preprints featured in Development's 'In preprints' articles between 2022-2023
List by | Alex Eve, Katherine Brown |
preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by | preLights peer support |
The Society for Developmental Biology 82nd Annual Meeting
This preList is made up of the preprints discussed during the Society for Developmental Biology 82nd Annual Meeting that took place in Chicago in July 2023.
List by | Joyce Yu, Katherine Brown |
CSHL 87th Symposium: Stem Cells
Preprints mentioned by speakers at the #CSHLsymp23
List by | Alex Eve |
Journal of Cell Science meeting ‘Imaging Cell Dynamics’
This preList highlights the preprints discussed at the JCS meeting 'Imaging Cell Dynamics'. The meeting was held from 14 - 17 May 2023 in Lisbon, Portugal and was organised by Erika Holzbaur, Jennifer Lippincott-Schwartz, Rob Parton and Michael Way.
List by | Helen Zenner |
9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
Alumni picks – preLights 5th Birthday
This preList contains preprints that were picked and highlighted by preLights Alumni - an initiative that was set up to mark preLights 5th birthday. More entries will follow throughout February and March 2023.
List by | Sergio Menchero et al. |
CellBio 2022 – An ASCB/EMBO Meeting
This preLists features preprints that were discussed and presented during the CellBio 2022 meeting in Washington, DC in December 2022.
List by | Nadja Hümpfer et al. |
2nd Conference of the Visegrád Group Society for Developmental Biology
Preprints from the 2nd Conference of the Visegrád Group Society for Developmental Biology (2-5 September, 2021, Szeged, Hungary)
List by | Nándor Lipták |
Fibroblasts
The advances in fibroblast biology preList explores the recent discoveries and preprints of the fibroblast world. Get ready to immerse yourself with this list created for fibroblasts aficionados and lovers, and beyond. Here, my goal is to include preprints of fibroblast biology, heterogeneity, fate, extracellular matrix, behavior, topography, single-cell atlases, spatial transcriptomics, and their matrix!
List by | Osvaldo Contreras |
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
List by | Alex Eve |
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
List by | Jesus Victorino |
Single Cell Biology 2020
A list of preprints mentioned at the Wellcome Genome Campus Single Cell Biology 2020 meeting.
List by | Alex Eve |
Society for Developmental Biology 79th Annual Meeting
Preprints at SDB 2020
List by | Irepan Salvador-Martinez, Martin Estermann |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
List by | Ana Dorrego-Rivas |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
List by | Ana Dorrego-Rivas |
Cell Polarity
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
List by | Yamini Ravichandran |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by | Maiko Kitaoka et al. |
3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Updated until July 2021.
List by | Paul Gerald L. Sanchez and Stefano Vianello |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
List by | Madhuja Samaddar et al. |
EDBC Alicante 2019
Preprints presented at the European Developmental Biology Congress (EDBC) in Alicante, October 23-26 2019.
List by | Sergio Menchero et al. |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
List by | Dey Lab |
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
List by | Alex Eve |
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
List by | Rob Hynds |
Young Embryologist Network Conference 2019
Preprints presented at the Young Embryologist Network 2019 conference, 13 May, The Francis Crick Institute, London
List by | Alex Eve |
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
List by | Alexa Sadier |
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
List by | Dey Lab |
Zebrafish immunology
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
List by | Shikha Nayar |
Also in the evolutionary biology category:
‘In preprints’ from Development 2022-2023
A list of the preprints featured in Development's 'In preprints' articles between 2022-2023
List by | Alex Eve, Katherine Brown |
preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by | preLights peer support |
EMBO | EMBL Symposium: The organism and its environment
This preList contains preprints discussed during the 'EMBO | EMBL Symposium: The organism and its environment', organised at EMBL Heidelberg, Germany (May 2023).
List by | Girish Kale |
9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
List by | Alex Eve |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
List by | Ana Dorrego-Rivas |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by | Maiko Kitaoka et al. |
ECFG15 – Fungal biology
Preprints presented at 15th European Conference on Fungal Genetics 17-20 February 2020 Rome
List by | Hiral Shah |
COVID-19 / SARS-CoV-2 preprints
List of important preprints dealing with the ongoing coronavirus outbreak. See http://covidpreprints.com for additional resources and timeline, and https://connect.biorxiv.org/relate/content/181 for full list of bioRxiv and medRxiv preprints on this topic
List by | Dey Lab, Zhang-He Goh |
1
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
List by | Alex Eve |
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
List by | Alexa Sadier |
Also in the genomics category:
BSCB-Biochemical Society 2024 Cell Migration meeting
This preList features preprints that were discussed and presented during the BSCB-Biochemical Society 2024 Cell Migration meeting in Birmingham, UK in April 2024. Kindly put together by Sara Morais da Silva, Reviews Editor at Journal of Cell Science.
List by | Reinier Prosee |
preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by | preLights peer support |
9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
Semmelweis Symposium 2022: 40th anniversary of international medical education at Semmelweis University
This preList contains preprints discussed during the 'Semmelweis Symposium 2022' (7-9 November), organised around the 40th anniversary of international medical education at Semmelweis University covering a wide range of topics.
List by | Nándor Lipták |
20th “Genetics Workshops in Hungary”, Szeged (25th, September)
In this annual conference, Hungarian geneticists, biochemists and biotechnologists presented their works. Link: http://group.szbk.u-szeged.hu/minikonf/archive/prg2021.pdf
List by | Nándor Lipták |
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
List by | Jesus Victorino |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by | Maiko Kitaoka et al. |
Zebrafish immunology
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
List by | Shikha Nayar |
Also in the biophysics category:
Structural basis of respiratory complexes adaptation to cold temperatures
Actin polymerization drives lumen formation in a human epiblast model
Learning a conserved mechanism for early neuroectoderm morphogenesis
Also in the cell biology category:
Fetal brain response to maternal inflammation requires microglia
Alteration of long and short-term hematopoietic stem cell ratio causes myeloid-biased hematopoiesis
Clusters of lineage-specific genes are anchored by ZNF274 in repressive perinucleolar compartments
Also in the developmental biology category:
Alteration of long and short-term hematopoietic stem cell ratio causes myeloid-biased hematopoiesis
Temporal constraints on enhancer usage shape the regulation of limb gene transcription
OGT prevents DNA demethylation and suppresses the expression of transposable elements in heterochromatin by restraining TET activity genome-wide
Also in the evolutionary biology category:
Fetal brain response to maternal inflammation requires microglia
How the liver contributes to stomach warming in the endothermic white shark Carcharodon carcharias
A long non-coding RNA at the cortex locus controls adaptive colouration in butterflies
AND
The ivory lncRNA regulates seasonal color patterns in buckeye butterflies
AND
A micro-RNA drives a 100-million-year adaptive evolution of melanic patterns in butterflies and moths
Also in the genomics category:
Temporal constraints on enhancer usage shape the regulation of limb gene transcription