Close

Ender3 3D Printer Kit Transformed into Open, Programmable Syringe Pump Set

Sander Baas, Vittorio Saggiomo

Preprint posted on 4 June 2021 https://chemrxiv.org/articles/preprint/Ender3_3D_Printer_Kit_Transformed_into_Open_Programmable_Syringe_Pump_Set/14718183

An inexpensive 3D printer repurposed into a set of high-precision syringe pumps for research applications.

Selected by Afonso Mendes

Video 1 – Showcase of the Ender3 syringe pump system. Adapted from Video 3 of the preprint (2.5x original speed).

 

Background

Syringe pumps are widely used for research purposes [1-5], but those commercially available are costly and provide little opportunity for automation [6]. Thus, many groups turned to building their own syringe pumps. These “Do It Yourself” (DIY) syringe pumps typically consist of a 3D-printed frame, stepper motors, and store-bought fixings such as screws and nuts. Also, they are usually driven by common controller boards and associated software, such as Arduino and Raspberry Pi [7,8].

While current DIY syringe pumps work correctly, building and programming them requires sourcing the parts and prior knowledge in programming. These factors limit their use by groups specialised in research fields such as Biology and Chemistry.

The advent of 3D printing resulted in the availability of common 3D printers at relatively low prices, enabling users to manufacture parts and devices otherwise only available commercially [9].

Ironically, a standard 3D printer contains all the components required to build a set of syringe pumps, including stepper motors, a motherboard, a power supply, and linear motion systems. Also, the open software used to control 3D printers can be exploited for controlling the pumps, avoiding the need to program the pumps from scratch.

In this preprint, Baas and Saggiomo repurpose one of the cheapest 3D printers available in the market, the Creality Ender3, to build and control a set of three syringe pumps for under 200€.

 

Key findings

1) Hardware description, design files, and assembly guide

Most parts required to build the syringe pumps are included in the printer, and the remaining are relatively inexpensive and usually available at common hardware stores. Moreover, online stores specialised in selling 3D printers often sell these parts, enabling the user to buy all of the components in a single purchase and have them delivered locally. The pump model includes some 3D-printed components, for which the description and design files are provided in a ready-to-print format, as well as suggested printing settings and tips. Thus, the 3D printer can first be assembled to print those components, and then repurposed to build the pumps. The preprint also includes a complete list of the materials required and the corresponding budget.

Importantly, the authors provide a detailed step-by-step assembly guide and another guide describing ways to control the pumps. This last task can be achieved using freely available direct-control software. For example, Octoprint (www.octoprint.org) allows the user to control the pumps remotely. Another method involves writing simple text commands that can be compiled in a text file and delivered to the pumps using a micro-SD card, allowing the user to control the pumps using the 3D printer’s interface. A detailed guide on how to write such text files is also provided in the manuscript.

 

Figure 1 – (A) 3D rendering of the three pumps after assembly. (B) Exploded view of the pumps with each part labeled according to its origin. Table 2 of the preprint describes each numbered part. Adapted from Figure 2 of the preprint.

 

2) Validation and characterisation

The authors address possible functional failures and explain how these were minimised by design. Furthermore, they test important aspects, such as the precision and stability of the pumps’ output. For example, 10 µL of water were dispensed 10 times using a 1 mL syringe, and the output volume was measured using a high-precision analytical scale. The average error calculated was well in the range of the scale’s own associated error, highlighting the pumps’ high precision. Nonetheless, the authors explain how fluid dispensing precision can be optimised by fine tuning the pumps. Flow stability, which is particularly important in microfluidics applications, was tested by delivering two liquids using two separate channels that merge into a third channel containing its own flow. Measurements and video evidence provided in the preprint show that the flow rate is barely disturbed at the interface between the liquids (Video 2).

Video 2 – Flow stability test. Two differently coloured liquids are pumped at a controlled rate through two separate channels that merge into a third channel containing a reference flow. A few moments after the flows are established, a steady state is achieved, and the flows’ direction and velocity remain unchanged. Adapted from Video 2 of the preprint (2.65x original speed.

 

Why I think this work is important

The work developed in this preprint brings DIY syringe pumps even closer to inexperienced users by overcoming crucial limitations associated with building and controlling such devices. The pumps’ design is ingenious because they are inexpensive, and their assembly is fast, simple, and uses easily sourced materials. For these reasons, this work enables the acquisition and use of syringe pumps in laboratories worldwide to be independent of funding and previous knowledge in programming and electronics.

 

Questions for the authors:

  • Do you envision the possibility of repurposing 3D printers to build other devices used for research purposes? If so, do you plan to extend your work in that direction?
  • If it becomes widely used, this type of approach to obtain devices is expected to have a disruptive impact in the manufacturing industry and in companies providing commercial solutions. What do you expect to be the industry’s reaction to this possibility in terms of the services they provide? In your opinion, what should that reaction be?

 

References

[1] W. Zeng, I. Jacobi, D.J. Beck, S. Li, H.A. Stone. Characterization of syringe-pump-driven induced pressure fluctuations in elastic microchannels, Lab. Chip. 15 (2015) 1110–1115. https://doi.org/10.1039/C4LC01347F.

[2] F. Zhao, D. Cambié, V. Hessel, M.G. Debije, T. Noël. Real-time reaction control for solar production of chemicals under fluctuating irradiance, Green Chem. 20 (2018) 2459–2464. https://doi.org/10.1039/C8GC00613J.

[3] N. Convery, N. Gadegaard. 30 years of microfluidics, Micro Nano Eng. 2 (2019) 76–91. https://doi.org/10.1016/j.mne.2019.01.003.

[4] J.M. Pearce, N.C. Anzalone, C.L. Heldt. Open-Source Wax RepRap 3-D Printer for Rapid Prototyping Paper-Based Microfluidics, J. Lab. Autom. 21 (2016) 510–516. https://doi.org/10.1177/2211068215624408.

[5] R. Khnouf, D. Karasneh, E. Abdulhay, A. Abdelhay, W. Sheng, Z.H. Fan. Microfluidics based device for the measurement of blood viscosity and its modeling based on shear rate, temperature, and heparin concentration, Biomed. Microdevices. 21 (2019) 80. https://doi.org/10.1007/s10544-019-0426-5.

[6] B. Wijnen, E.J. Hunt, G.C. Anzalone, J.M. Pearce. Open-Source Syringe Pump Library, PLOS ONE. 9 (2014) e107216. https://doi.org/10.1371/journal.pone.0107216.

[7] A.S. Booeshaghi, E. da V. Beltrame, D. Bannon, J. Gehring, L. Pachter. Principles of open source bioinstrumentation applied to the poseidon syringe pump system, Sci. Rep. 9 (2019) https://doi.org/10.1038/s41598-019-48815-9.

[8] P. Almada, P.M. Pereira, S. Culley, G. Caillol, F. Boroni-Rueda, C.L. Dix, G. Charras, B. Baum, R.F. Laine, C. Leterrier, R. Henriques. Automating multimodal microscopy with NanoJ-Fluidics, Nat. Commun. 10 (2019) 1223. https://doi.org/10.1038/s41467-019-09231-9.

[9] M. Del Rosario, H. S. Heil, A. Mendes, V. Saggiomo, R. Henriques. The field guide to 3D printing in microscopy. Preprints 2021, 2021050352. https://doi.org/10.20944/preprints202105.0352.v1.

Tags: 3d printing, diy, microfluidics, syringe pump

Posted on: 5 June 2021 , updated on: 7 June 2021

doi: https://doi.org/10.1242/prelights.29392

Read preprint (No Ratings Yet)

Author's response

Vittorio Saggiomo shared

Q1: Do you envision the possibility of repurposing 3D printers to build other devices used for research purposes? If so, do you plan to extend your work in that direction?

A1: Definitely. At the end of the day, 3D printers are very cheap robotic systems. The frame, the linear movement, the thermistors and the heating elements, the fans, the switches, almost everything in a 3D printer kit can be used for research. Personally, I think that the next step would be to include the heating elements in a fluidic device, for example for high temperature reactions in flow or as incubator.

The other important point of this approach is G-code. Scripting in G-code is easier and way more intuitive than starting Python from scratch, and it can open the pump automation to researchers who have never programmed in their life.

 

Q2: If it becomes widely used, this type of approach to obtain devices is expected to have a disruptive impact in the manufacturing industry and in companies providing commercial solutions. What do you expect to be the industry’s reaction to this possibility in terms of the services they provide? In your opinion, what should that reaction be?

A2: That’s a complex question, and honestly, I don’t have a simple answer. The final price of an instrument is mostly given by supply and demand. If a syringe pump doesn’t have that much demand, then the price must be high for a company to survive. Here we leverage the fact that this 3D printer kit is sold in the millions, so the price is extremely low. Lower than buying the single components.

It would be easy to say that companies should decrease the price of research devices, but I don’t think it’s economically sustainable.

In my opinion a more open hardware approach would benefit both the companies and the researchers. Companies could sell open hardware projects, like this one, as they already have production and distribution capabilities in place. They could do the 3D printing, the assembly, the quality control and provide support. In this way the price is lower than a standard instrument, and they provide services which are not provided by the research groups themselves.

Have your say

Your email address will not be published. Required fields are marked *

This site uses Akismet to reduce spam. Learn how your comment data is processed.

Sign up to customise the site to your preferences and to receive alerts

Register here

preLists in the biochemistry category:

BSCB-Biochemical Society 2024 Cell Migration meeting

This preList features preprints that were discussed and presented during the BSCB-Biochemical Society 2024 Cell Migration meeting in Birmingham, UK in April 2024. Kindly put together by Sara Morais da Silva, Reviews Editor at Journal of Cell Science.

 



List by Reinier Prosee

Preprint Peer Review – Biochemistry Course at UFRJ, Brazil

Communication of scientific knowledge has changed dramatically in recent decades and the public perception of scientific discoveries depends on the peer review process of articles published in scientific journals. Preprints are key vehicles for the dissemination of scientific discoveries, but they are still not properly recognized by the scientific community since peer review is very limited. On the other hand, peer review is very heterogeneous and a fundamental aspect to improve it is to train young scientists on how to think critically and how to evaluate scientific knowledge in a professional way. Thus, this course aims to: i) train students on how to perform peer review of scientific manuscripts in a professional manner; ii) develop students' critical thinking; iii) contribute to the appreciation of preprints as important vehicles for the dissemination of scientific knowledge without restrictions; iv) contribute to the development of students' curricula, as their opinions will be published and indexed on the preLights platform. The evaluations will be based on qualitative analyses of the oral presentations of preprints in the field of biochemistry deposited in the bioRxiv server, of the critical reports written by the students, as well as of the participation of the students during the preprints discussions.

 



List by Marcus Oliveira

CellBio 2022 – An ASCB/EMBO Meeting

This preLists features preprints that were discussed and presented during the CellBio 2022 meeting in Washington, DC in December 2022.

 



List by Nadja Hümpfer et al.

20th “Genetics Workshops in Hungary”, Szeged (25th, September)

In this annual conference, Hungarian geneticists, biochemists and biotechnologists presented their works. Link: http://group.szbk.u-szeged.hu/minikonf/archive/prg2021.pdf

 



List by Nándor Lipták

Fibroblasts

The advances in fibroblast biology preList explores the recent discoveries and preprints of the fibroblast world. Get ready to immerse yourself with this list created for fibroblasts aficionados and lovers, and beyond. Here, my goal is to include preprints of fibroblast biology, heterogeneity, fate, extracellular matrix, behavior, topography, single-cell atlases, spatial transcriptomics, and their matrix!

 



List by Osvaldo Contreras

ASCB EMBO Annual Meeting 2019

A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)

 



List by Madhuja Samaddar et al.

EMBL Seeing is Believing – Imaging the Molecular Processes of Life

Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019

 



List by Dey Lab

Cellular metabolism

A curated list of preprints related to cellular metabolism at Biorxiv by Pablo Ranea Robles from the Prelights community. Special interest on lipid metabolism, peroxisomes and mitochondria.

 



List by Pablo Ranea Robles

MitoList

This list of preprints is focused on work expanding our knowledge on mitochondria in any organism, tissue or cell type, from the normal biology to the pathology.

 



List by Sandra Franco Iborra

Also in the bioinformatics category:

‘In preprints’ from Development 2022-2023

A list of the preprints featured in Development's 'In preprints' articles between 2022-2023

 



List by Alex Eve, Katherine Brown

9th International Symposium on the Biology of Vertebrate Sex Determination

This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.

 



List by Martin Estermann

Alumni picks – preLights 5th Birthday

This preList contains preprints that were picked and highlighted by preLights Alumni - an initiative that was set up to mark preLights 5th birthday. More entries will follow throughout February and March 2023.

 



List by Sergio Menchero et al.

Fibroblasts

The advances in fibroblast biology preList explores the recent discoveries and preprints of the fibroblast world. Get ready to immerse yourself with this list created for fibroblasts aficionados and lovers, and beyond. Here, my goal is to include preprints of fibroblast biology, heterogeneity, fate, extracellular matrix, behavior, topography, single-cell atlases, spatial transcriptomics, and their matrix!

 



List by Osvaldo Contreras

Single Cell Biology 2020

A list of preprints mentioned at the Wellcome Genome Campus Single Cell Biology 2020 meeting.

 



List by Alex Eve

Antimicrobials: Discovery, clinical use, and development of resistance

Preprints that describe the discovery of new antimicrobials and any improvements made regarding their clinical use. Includes preprints that detail the factors affecting antimicrobial selection and the development of antimicrobial resistance.

 



List by Zhang-He Goh
Close