A transition from SoxB1 to SoxE transcription factors is essential for progression from pluripotent blastula cells to neural crest cells
Preprint posted on July 13, 2018 https://www.biorxiv.org/content/early/2018/07/13/359752
Article now published in Developmental Biology at http://dx.doi.org/10.1016/j.ydbio.2018.08.008
Why This Is Cool – This story is fundamental developmental biology at it’s finest. The authors set out to answer a seemingly facile question – as development progresses, why does the vertebrate embryo switch between different transcriptions factors that seem to do the same thing? SoxB1 transcription factors (Sox1-3) maintain the stem cell state in the early blastula and in embryonic stem cells. As the embryo transitions to being more defined and differentiated, the neural crest cells represent one of the last cell populations holding onto a stem cell-like state and pluripotency. Though neural crest cells and blastula cells have many similarities, they express different Sox transcription factors, with the neural crest transitioning to expressing SoxE factors (Sox8-10). The authors demonstrate this through a beautiful sequence of in situs of Xenopus embryos where you can see the gradual restriction of Sox2&3expression to the neural plate, while Sox9&10 becomes upregulated specifically in the neural crest (Figure1).
The authors then complete a series of in vivo rescue experiments and functional differentiation experiments to test what redundancy or specificity exists between the SoxB1 and SoxE factors. First, early expression of SoxE in the blastula inhibits expression of pluripotent cell markers. Second, forced expression of SoxB1 in the neural crest downregulates specific neural crest markers. These results are consistent with their spatial expression patterns, but how do they affect the actual function of pluripotency, i.e. the ability of cells to differentiate into multiple lineages? Here, they used explant cultures of blastula cells and measured the induction of mesoderm markers over time. Overexpression of both SoxB1 and SoxE factors inhibited mesoderm differentiation, but this appears to be a concentration-dependent response, as both SoxB1 and SoxE factors could also rescue mesoderm differentiation in SoxB1 depleted explants. This means that both SoxB1 and SoxE can maintain pluripotency, but their expression is still spatially separated, why? The authors hypothesize that the different transcription factors prepare the cells to adopt different lineages, namely SoxB1 for neural induction and SoxE for neural crest, following their spatial expression patterns. Further utilizing their explant system to test functional differentiation, they are able to confirm this hypothesis. Only SoxB1 factors can rescue neural marker expression and only SoxE factors can rescue neural crest marker expression.
Why I Selected It – I started my career studying how cells move in the context of cancer cell metastasis. This field is huge and obviously very important to human health, but I think it collectively forgets that cells don’t only move when they aren’t supposed to. Developmental biology was studying how cells move in vivo long before it became a major target of various cancer therapies. We still have a lot to learn about when, why, and how cells move in vivo and this is why the neural crest is one of my new scientific loves. The neural crest derivates migrate huge distances in development, ending up at specific places at the end, not unlike cancer cells undergoing metastasis. If we can better understand how cells move in the massively complex context of animal development, maybe we can better understand how cells move in cancer. This is why I’m trying to learn as much as I can about the neural crest.
Open Questions –
- Post-translational modification alters the function of SoxE factors. Is there a similar mechanism for SoxB1 factors? If not, could this specialty also contribute to why SoxE factors are necessary? Would you get different results if you block the post-translational modification of SoxE factors in your experiments?
- Is the somewhat overlapping function of SoxB1 and SoxE factors also represented in their sequence or structure similarities? Since the Sox family was created through many duplication events are these two sub-classes particularly closely related?
- For the in vivo rescue experiments, how severe are the defects? Can you still get a functional adult organism with early expression of SoxE or forced expression of SoxB1 in the neural crest?
Related References –
- Sox family of transcription factors in controlling pluripotency
- Takahashi K. & Yamanaka S. Induction of pluripotent stem cells from mouse embryonic and adult fibroblast cultures by defined factors. Cell (2006). 25;126(4):663-76.
- Neural crest cells and blastula cells have similar gene expression profiles
- Buitrago-Delgado E., Nordin K., Rao A., Geary L., & LaBonne C. Shared pluripotency programs suggest derivation of vertebrate neural crest from blastula cells. Science (2015). 19; 348(6241): 1332–1335.
- Explant culture system used
- Ariizumi T. & Asashima M. In vitro induction systems for analyses of amphibian organogenesis and body patterning. Int J. Dev Biol (2001). 45(1):273-9.
Posted on: 2nd August 2018Read preprint
Also in the developmental biology category:
Astrocytes and neurons share brain region-specific transcriptional signatures
|Selected by||Idoia Quintana-Urzainqui|
Endogenous retroviruses drive species-specific germline transcriptomes in mammals
|Selected by||Petra Kovacikova|
Self-organized patterning of cell morphology via mechanosensitive feedback
|Selected by||Mariana De Niz|
preListsdevelopmental biology category:in the
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
|List by||Yamini Ravichandran|
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
|List by||Maiko Kitaoka, Madhuja Samaddar, Miguel V. Almeida, Sejal Davla, Jennifer Ann Black, Gautam Dey|
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells)
|List by||Paul Gerald L. Sanchez and Stefano Vianello|
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
|List by||Madhuja Samaddar, Ramona Jühlen, Amanda Haage, Laura McCormick, Maiko Kitaoka|
EDBC Alicante 2019
Preprints presented at the European Developmental Biology Congress (EDBC) in Alicante, October 23-26 2019.
|List by||Sergio Menchero, Jesus Victorino, Teresa Rayon, Irepan Salvador-Martinez|
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
|List by||Gautam Dey|
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
|List by||Alex Eve|
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
|List by||Rob Hynds|
Young Embryologist Network Conference 2019
Preprints presented at the Young Embryologist Network 2019 conference, 13 May, The Francis Crick Institute, London
|List by||Alex Eve|
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
|List by||Alexa Sadier|
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
|List by||Gautam Dey|
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
|List by||Shikha Nayar|