SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
List by Alex Eve
Preprints:
Moana: A robust and scalable cell type classification framework for single-cell RNA-Seq data
https://www.biorxiv.org/content/10.1101/456129v1
Presented by Itai Yanai in the Satellite Symposium: Machine Learning for Developmental Biology.
Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images
https://www.biorxiv.org/content/10.1101/335216v4
Presented by Juan Caicedo in the Satellite Symposium: Machine Learning for Developmental Biology.
FIN-Seq: Transcriptional profiling of specific cell types in frozen archived tissue from the human central nervous system
https://www.biorxiv.org/content/10.1101/602847v1
Presented by Constance Cepko in the “Development: from Deconstruction to Reconstruction” session.
Daisy quorum drives for the genetic restoration of wild populations
https://www.biorxiv.org/content/10.1101/115618v2
Presented by Kevin Esvelt in the “Genome Editing: from Transgenesis to CRISPR” (CS I-1) session.
Size control of the inner ear via hydraulic feedback
https://www.biorxiv.org/content/10.1101/349381v1
Presented by Akankshi Munjal in the “Morphogenesis: from Camera Lucida to In Toto Imaging” (CS I-2) session.
Hydraulic control of embryo size, tissue shape and cell fate
https://www.biorxiv.org/content/10.1101/389619v1
Presented by Chii Chan in the “Morphogenesis: from Camera Lucida to In Toto Imaging” (CS I-2) session. Now published in Nature.
Lumen expansion facilitates epiblast-primitive endoderm fate specification in the mouse blastocyst formation
https://www.biorxiv.org/content/10.1101/575282v1
Presented by Chii Chan in the “Morphogenesis: from Camera Lucida to In Toto Imaging” (CS I-2) session.
Satellite DNA-containing gigantic introns in a unique gene expression program during Drosophila spermatogenesis
https://www.biorxiv.org/content/10.1101/493254v1
Presented by Jaclyn Fingerhut in the “RNA: from siRNA to lnRNA” (CS I-3) session. Now published in PLoS Genetics.
The role of lineage, hemilineage and temporal identity in establishing neuronal connectivity in the Drosophila larval CNS
https://www.biorxiv.org/content/10.1101/617936v2
Presented by Christopher Doe in the “Developmental Timing: from Heterochronic Genes to Aging” (CS I-6) session.
Latent developmental potential to form limb-like skeletal structures in zebrafish
https://www.biorxiv.org/content/10.1101/450619v1
Presented by Michael Brent Hawkins in the “Evolution: from HOX genes to Floral Evolution” (CS I-4) session.
The evolutionary origins and diversity of the neuromuscular system of paired appendages in batoids
https://www.biorxiv.org/content/10.1101/644062v1
Presented by Tetsuya Nakamura in “Evolution: from HOX genes to Floral Evolution” (CS I-4) session.
Dissecting mechanisms of human islet differentiation and maturation through epigenome profiling
https://www.biorxiv.org/content/10.1101/613026v1
Presented by Doug Melton in the “Reprogramming: from Cloning to Curing Disease” plenary session.
Dissecting the dynamics of signaling events in the BMP, WNT, and NODAL cascade during self-organized fate patterning in human gastruloids
https://www.biorxiv.org/content/10.1101/440164v2
Presented by Aryeh Warmflash in the “Human Development: from Analysis to Organoids” (CS II-3) session.
A novel self-organizing embryonic stem cell system reveals signaling logic underlying the patterning of human ectoderm
https://www.biorxiv.org/content/10.1101/518803v1
Presented by Aryeh Warmflash in the “Human Development: from Analysis to Organoids” (CS II-3) session.
TEAD4/YAP1/WWTR1 prevent the premature onset of pluripotency prior to the 16-cell stage
https://www.biorxiv.org/content/10.1101/663005v1
Presented by Amy Ralston in the “Gene Regulation: from Enhancers to Single-cell transcriptomics” (CS II-1) session.
In vitro characterization of the human segmentation clock
https://www.biorxiv.org/content/10.1101/461822v1
Presented by Magarete Diaz Cuadros in the “Human Development: from Analysis to Organoids” (CS I-3) session.
Region-specific regulation of stem cell-driven regeneration in tapeworms
https://www.biorxiv.org/content/10.1101/495234v2
Presented by Tania Rozario in the “Healing & Regeneration: from Phenomena to Mechanisms” (CS II-4) session.
Efficient Zygotic Genome Editing via RAD51-Enhanced Interhomolog Repair
https://www.biorxiv.org/content/10.1101/263699v3
Presented by Jonathan Wilde in the “Lineage: from Imaging to Barcoding” (CS II-2) session.
Lineage tracing on transcriptional landscapes links state to fate during differentiation
https://www.biorxiv.org/content/10.1101/467886v2
Presented by Allon Klein in the “Gene Regulation: from Enhancers to Single-cell Transcriptomics” (CS II-2) session.
A lineage-resolved molecular atlas of C. elegans embryogenesis at single cell resolution
https://www.biorxiv.org/content/10.1101/565549v2
Presented by Zhirong Bao in the “Lineage: from Imaging to Barcoding” (CS II-2) session.
A genetic, genomic, and computational resource for exploring neural circuit function
https://www.biorxiv.org/content/10.1101/385476v1
Presented by Claude Desplan in the “Pattern formation: from Organizers to Morphogens and Gene Regulatory Networks” plenary session.
Stem cell differentiation trajectories in Hydra resolved at single-cell resolution
https://www.biorxiv.org/content/10.1101/460154v1
Presented by Celina Juliano in the “Development: from Old Questions to New Systems” (CS III-3) session.
Single cell analysis reveals modified hematopoietic cell composition affecting inflammatory and immunopathological responses in Astyanax mexicanus
https://www.biorxiv.org/content/10.1101/647255v3
Presented by Nicolas Rohner in the “Development: from Old Questions to New Systems” (CS III-3) session.
High-throughput, image-based flow cytometry and clustering method for phenotyping heterogeneous cell populations
https://www.biorxiv.org/content/10.1101/603035v1
Presented by Nicolas Rohner in the “Development: from Old Questions to New Systems” (CS III-3) session.
Apigenin as a Candidate Prenatal Treatment for Trisomy 21: Effects in Human Amniocytes and the Ts1Cje Mouse Model
https://www.biorxiv.org/content/10.1101/495283v1
Presented by Diana Bianchi in the “Developmental Biology & Society: from Fundamental to Practical” plenary session.
Categories: developmental biology , evolutionary biology , neuroscience , plant biology
Posted on: 26 July 2019 , updated on: 10 February 2020
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