ATAT1-enriched vesicles promote microtubule acetylation via axonal transport
Preprint posted on February 06, 2019 https://www.biorxiv.org/content/10.1101/542464v1
Microtubules are frequently described as a transport network: the railroads of the cell. What has become clear in the last few years is that far from being boring static tracks that the analogy suggests, microtubules are plastic. Of course we knew that microtubules are dynamic at their ends, but what we’re beginning to understand is that each microtubule lattice is deformable and modifiable in all sorts of new and interesting ways.
The focus of the preprint is to look at transport on microtubules in neuronal systems. What the authors discover is that modification of the microtubules (by acetylation) alters transport, and that the modification is driven by the cargo itself.
Even et al. describe that transport on acetylated microtubules is faster. They show using neurons from Atat1 knockout mice (Atat1 is a tubulin acetylase), that transport of lysosomes and mitochondria is impaired. Using knockdown of Atat1 or Atat2 in motor neurons in Drosophila larvae, they also see reduced mobility of vesicles marked with synaptotagmin-GFP. Measurements in either mouse or fly systems reveal that anterograde and retrograde transport is sensitive to microtubule acetylation. The authors can purify tubulin from Atat1 KO mice and in vitro reconstitution of motility using this material also shows reduced transport. The authors could confirm the lack of acetylation and normal amounts of other tubulin modifications. This is important because a weakness of knockout studies in mice is that compensation for the loss of a gene can result in other changes which may conceal – or in this case underlie – a phenotype.
The authors analysed the proteome of a fraction enriched in vesicular membrane and found comparatively more ATAT1. This suggests that ATAT1 could be hitching a ride on vesicles, but how does it get there? It had previously been reported that ATAT1 can interact with the clathrin adaptor AP-2 and, while clathrin and adaptors were also enriched, the ATAT1 found in mouse brain extracts corresponds to isoforms of ATAT1 which lack the AP-2 binding region. This is an important point because the majority of vesicular cargo transported in axons is likely to be uncoated. The authors probed the region of ATAT1 that was required for vesicle binding. Truncation of the C-terminus to a 1-242 fragment or shorter did not bind to vesicles. This experiment doesn’t nail how ATAT1 binds to vesicles but certainly confirms that the short isoforms that are detected in mouse brain are capable of binding vesicular membrane in the absence of an AP-2/clathrin coat.
Finally, the authors test the idea that acetylation happens during transport. They present some evidence that this is the case and they also describe transport throughput in neurons being increased, which is consistent with the idea that acetylation speeds up transport.
What I like about this work
There’s been a lot of hype around “the tubulin code”, which is the idea that tubulin modifications can alter the properties and behaviour of microtubule-dependent processes. While there have been some clear examples of tubulin modifications altering function (e.g. acetylated microtubules in the mitotic spindle), there are some observations which are more difficult to reconcile. Relevant to this paper, acetylation occurs on the inside of the microtubule. How does the acetylase get in? Why do motors running on the outer surface of the microtubule care about this interior modification?
Very recent work from other groups has shown that there are defects in the microtubule lattice and that these may even result from motors trampling over the microtubule surface (reviewed by Cross, 2019). This preprint converges with those papers: lattice defects might allow acetylase access to the microtubule interior. The idea that vesicles are carrying the means to grease their way to faster transport is very intriguing. This model has a precedent since earlier work (from some of the same authors) suggests that fast axonal transport is powered by glycolysis on-board the vesicle (Zala et al., 2013).
I like papers that reveal new complexity in biological systems. I suppose the fascination is in seeing the breakdown of the simple analogies that were constructed to explain them. Papers like this show that microtubules aren’t the “railroads of the cell”, at least not in the way that railroads in the real world work!
Generally, I liked the multiple approaches used in the paper to tackle the central question. The authors use imaging, proteomics, in vitro assays, two different neuronal transport systems and so on. The work is very comprehensive.
Questions to the authors
- Presumably ATAT1 is only present on a subset of vesicles? My guess is that it is absent from mitochondria for example. Is the model then that cargo which lacks ATAT1 would only benefit from the accelerated transport if acetylation had previously occurred?
- Is this the sole mechanism for acetylation of microtubules at very distal sites? Given the diffusion constraint in neurites, it seems likely that a delivery mechanism needs to be invoked for tubulin acetylation.
- Have the authors considered how this process works in bundles of microtubules such as those found in axons? One would predict modification of neighbouring microtubules by vesicle-transported acetylase (unless those neighbours are free of lattice defects).
Cross, R.A. (2019) Microtubule lattice plasticity Current Opinion in Cell Biology doi: 10.1242/jcs.219550
Even et al. (2019) ATAT1-enriched vesicles promote microtubule acetylation via axonal transport bioRxiv doi: 10.1101/542464
Zala et al. (2013) Vesicular glycolysis provides on-board energy for fast axonal transport Cell doi: 10.1016/j.cell.2012.12.029
Posted on: 13th March 2019Read preprint
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