Behavioral signatures of a developing neural code
Posted on: 12 January 2020 , updated on: 13 January 2020
Preprint posted on 27 November 2019
Article now published in Current Biology at http://dx.doi.org/10.1016/j.cub.2020.06.040
Young fish go hunting! Avitan et al. investigate the neural correlates of developing behavioral signatures
Selected by Amrutha SwaminathanCategories: animal behavior and cognition, developmental biology, neuroscience
Background:
Animal behavior is probably specified early during development, however, knowledge about the contribution of neuronal circuits to the development and establishment of behavior is sparse. One of the major reasons for this is the challenge of measuring behavior in young mammals, owing to long gestational periods, the need for significant nurturing and absence of measurable behavioral outputs. This limitation can be overcome using developing zebrafish, since zebrafish larvae show robust measurable behavioral outputs. In addition, they are transparent, which makes them amenable to high-resolution brain imaging. In this preprint, Avitan et al use these two advantages to connect early larval hunting behavior with neural coding.
Key findings:
Zebrafish larvae sustain on the nutrients present in the yolk until 5 days post fertilization (dpf), following which they start hunting for sustenance. At this stage, larvae reared in the laboratory can be fed with powdered feed and/or live feed. The authors establish, using recordings from a high-speed camera, that larval zebrafish hunt Paramecia from 5 dpf onwards. Upon quantification of the recordings, the hunting bouts are observed to increase over development, but become shorter, more efficient and accurate as the larvae mature (measured from 5 dpf to 15 dpf). Hence, hunting performance of zebrafish larvae improves with age.
Following the characterization of hunting behavior and the pattern it follows with development, the authors focus on understanding the neural basis of this behavior and its age-dependent refinement. The authors perform 2-photon calcium imaging of the optic tectum (a region of the brain essential for hunting behavior), and measure the amplitude of each neuron’s response to a prey-like stimulus presented at different positions/angles ranging from 450 to 1650 of the visual field (in increments of 150; the body axis is 00). The authors repeat this for larvae of different ages (from 5 dpf to 15 dpf). From this heatmap of amplitude of activity for about 200 neurons, at different angles of stimulus presentation compared across development, the authors find that, while rear sensory response does not undergo significant change, response to frontal stimuli improves during development. Hence, there are substantial functional changes at the single neuron and population level from 5-15 dpf as the larvae grow, especially in the frontal stimulus response.
In the next step, the authors use a linear decoder to correlate the original stimulus and the decoded stimulus position. From this, they find that decoding performance is higher as the fish grow, primarily due to improvement of response to frontal stimuli. Further, a population of young larvae shows more variability in decoding performance (correlated with hunting performance), which evens out by 15 dpf, by which time the larvae are expert hunters. Hence, the ability of zebrafish larvae to accurately spatially localize their prey reflects on their hunting success, and both these attributes improve as larvae mature.
Neural coding and hunting behaviour: Hunting accuracy improves with age (middle panel). This is due to better decoding performance especially in frontal sensory response (right panel-younger larvae are clearly less efficient in the frontal visual response, but there is not much difference in rear visual response).
To summarize, these results show that zebrafish larvae become more efficient hunters as they grow. Their hunting efficiency and coding efficiency, which are correlated, improve and are refined as the larvae grow, with a special emphasis on frontal visual response.
Why do I like this work?
As the authors have pointed out in the manuscript, the connection between the establishment of behavior and neural coding is not well understood. The study addresses this caveat in the field, taking hunting behavior as an example. Specifically, I liked the overlap between their findings in the time-dependent refinement of hunting behavior and neural coding.
Future directions/questions for the authors:
- The brain is very plastic during development. How perfect is the resolution of the imaging that the authors can be sure that they are imaging the same neuron at different ages?
- In the analysis of neural coding, the authors present prey-like spots and image the optic tectum. Is prey identification solely based on visual cues in larvae? Do other factors like smell play a role?
- The authors provide correlative evidence that certain neurons respond to cues placed in different angles/positions. Is there any direct proof from related studies that these neurons are indeed involved in visual sensory response?
doi: https://doi.org/10.1242/prelights.16220
Read preprintSign up to customise the site to your preferences and to receive alerts
Register hereAlso in the animal behavior and cognition category:
Platelet-derived LPA16:0 inhibits adult neurogenesis and stress resilience in anxiety disorder
Harvey Roweth
Geometric analysis of airway trees shows that lung anatomy evolved to enable explosive ventilation and prevent barotrauma in cetaceans
Sarah Young-Veenstra
A depth map of visual space in the primary visual cortex
Wing Gee Shum, Phoebe Reynolds
Also in the developmental biology category:
Germplasm stability in zebrafish requires maternal Tdrd6a and Tdrd6c
Justin Gutkowski
Cellular signalling protrusions enable dynamic distant contacts in spinal cord neurogenesis
Ankita Walvekar
Actin-based deformations of the nucleus control multiciliated ependymal cell differentiation
Ryan Harrison
Also in the neuroscience category:
Platelet-derived LPA16:0 inhibits adult neurogenesis and stress resilience in anxiety disorder
Harvey Roweth
Investigating Mechanically Activated Currents from Trigeminal Neurons of Non-Human Primates
Vanessa Ehlers
Circadian modulation of mosquito host-seeking persistence by Pigment-Dispersing Factor impacts daily biting patterns
Javier Cavieres
preListsanimal behavior and cognition category:
in the9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
Bats
A list of preprints dealing with the ecology, evolution and behavior of bats
List by | Baheerathan Murugavel |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
List by | Ana Dorrego-Rivas |
Also in the developmental biology category:
BSDB/GenSoc Spring Meeting 2024
A list of preprints highlighted at the British Society for Developmental Biology and Genetics Society joint Spring meeting 2024 at Warwick, UK.
List by | Joyce Yu, Katherine Brown |
GfE/ DSDB meeting 2024
This preList highlights the preprints discussed at the 2024 joint German and Dutch developmental biology societies meeting that took place in March 2024 in Osnabrück, Germany.
List by | Joyce Yu |
‘In preprints’ from Development 2022-2023
A list of the preprints featured in Development's 'In preprints' articles between 2022-2023
List by | Alex Eve, Katherine Brown |
preLights peer support – preprints of interest
This is a preprint repository to organise the preprints and preLights covered through the 'preLights peer support' initiative.
List by | preLights peer support |
The Society for Developmental Biology 82nd Annual Meeting
This preList is made up of the preprints discussed during the Society for Developmental Biology 82nd Annual Meeting that took place in Chicago in July 2023.
List by | Joyce Yu, Katherine Brown |
CSHL 87th Symposium: Stem Cells
Preprints mentioned by speakers at the #CSHLsymp23
List by | Alex Eve |
Journal of Cell Science meeting ‘Imaging Cell Dynamics’
This preList highlights the preprints discussed at the JCS meeting 'Imaging Cell Dynamics'. The meeting was held from 14 - 17 May 2023 in Lisbon, Portugal and was organised by Erika Holzbaur, Jennifer Lippincott-Schwartz, Rob Parton and Michael Way.
List by | Helen Zenner |
9th International Symposium on the Biology of Vertebrate Sex Determination
This preList contains preprints discussed during the 9th International Symposium on the Biology of Vertebrate Sex Determination. This conference was held in Kona, Hawaii from April 17th to 21st 2023.
List by | Martin Estermann |
Alumni picks – preLights 5th Birthday
This preList contains preprints that were picked and highlighted by preLights Alumni - an initiative that was set up to mark preLights 5th birthday. More entries will follow throughout February and March 2023.
List by | Sergio Menchero et al. |
CellBio 2022 – An ASCB/EMBO Meeting
This preLists features preprints that were discussed and presented during the CellBio 2022 meeting in Washington, DC in December 2022.
List by | Nadja Hümpfer et al. |
2nd Conference of the Visegrád Group Society for Developmental Biology
Preprints from the 2nd Conference of the Visegrád Group Society for Developmental Biology (2-5 September, 2021, Szeged, Hungary)
List by | Nándor Lipták |
Fibroblasts
The advances in fibroblast biology preList explores the recent discoveries and preprints of the fibroblast world. Get ready to immerse yourself with this list created for fibroblasts aficionados and lovers, and beyond. Here, my goal is to include preprints of fibroblast biology, heterogeneity, fate, extracellular matrix, behavior, topography, single-cell atlases, spatial transcriptomics, and their matrix!
List by | Osvaldo Contreras |
EMBL Synthetic Morphogenesis: From Gene Circuits to Tissue Architecture (2021)
A list of preprints mentioned at the #EESmorphoG virtual meeting in 2021.
List by | Alex Eve |
EMBL Conference: From functional genomics to systems biology
Preprints presented at the virtual EMBL conference "from functional genomics and systems biology", 16-19 November 2020
List by | Jesus Victorino |
Single Cell Biology 2020
A list of preprints mentioned at the Wellcome Genome Campus Single Cell Biology 2020 meeting.
List by | Alex Eve |
Society for Developmental Biology 79th Annual Meeting
Preprints at SDB 2020
List by | Irepan Salvador-Martinez, Martin Estermann |
Planar Cell Polarity – PCP
This preList contains preprints about the latest findings on Planar Cell Polarity (PCP) in various model organisms at the molecular, cellular and tissue levels.
List by | Ana Dorrego-Rivas |
Cell Polarity
Recent research from the field of cell polarity is summarized in this list of preprints. It comprises of studies focusing on various forms of cell polarity ranging from epithelial polarity, planar cell polarity to front-to-rear polarity.
List by | Yamini Ravichandran |
TAGC 2020
Preprints recently presented at the virtual Allied Genetics Conference, April 22-26, 2020. #TAGC20
List by | Maiko Kitaoka et al. |
3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Updated until July 2021.
List by | Paul Gerald L. Sanchez and Stefano Vianello |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
List by | Madhuja Samaddar et al. |
EDBC Alicante 2019
Preprints presented at the European Developmental Biology Congress (EDBC) in Alicante, October 23-26 2019.
List by | Sergio Menchero et al. |
EMBL Seeing is Believing – Imaging the Molecular Processes of Life
Preprints discussed at the 2019 edition of Seeing is Believing, at EMBL Heidelberg from the 9th-12th October 2019
List by | Dey Lab |
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
List by | Alex Eve |
Lung Disease and Regeneration
This preprint list compiles highlights from the field of lung biology.
List by | Rob Hynds |
Young Embryologist Network Conference 2019
Preprints presented at the Young Embryologist Network 2019 conference, 13 May, The Francis Crick Institute, London
List by | Alex Eve |
Pattern formation during development
The aim of this preList is to integrate results about the mechanisms that govern patterning during development, from genes implicated in the processes to theoritical models of pattern formation in nature.
List by | Alexa Sadier |
BSCB/BSDB Annual Meeting 2019
Preprints presented at the BSCB/BSDB Annual Meeting 2019
List by | Dey Lab |
Zebrafish immunology
A compilation of cutting-edge research that uses the zebrafish as a model system to elucidate novel immunological mechanisms in health and disease.
List by | Shikha Nayar |
Also in the neuroscience category:
2024 Hypothalamus GRC
This 2024 Hypothalamus GRC (Gordon Research Conference) preList offers an overview of cutting-edge research focused on the hypothalamus, a critical brain region involved in regulating homeostasis, behavior, and neuroendocrine functions. The studies included cover a range of topics, including neural circuits, molecular mechanisms, and the role of the hypothalamus in health and disease. This collection highlights some of the latest advances in understanding hypothalamic function, with potential implications for treating disorders such as obesity, stress, and metabolic diseases.
List by | Nathalie Krauth |
‘In preprints’ from Development 2022-2023
A list of the preprints featured in Development's 'In preprints' articles between 2022-2023
List by | Alex Eve, Katherine Brown |
CSHL 87th Symposium: Stem Cells
Preprints mentioned by speakers at the #CSHLsymp23
List by | Alex Eve |
Journal of Cell Science meeting ‘Imaging Cell Dynamics’
This preList highlights the preprints discussed at the JCS meeting 'Imaging Cell Dynamics'. The meeting was held from 14 - 17 May 2023 in Lisbon, Portugal and was organised by Erika Holzbaur, Jennifer Lippincott-Schwartz, Rob Parton and Michael Way.
List by | Helen Zenner |
FENS 2020
A collection of preprints presented during the virtual meeting of the Federation of European Neuroscience Societies (FENS) in 2020
List by | Ana Dorrego-Rivas |
ASCB EMBO Annual Meeting 2019
A collection of preprints presented at the 2019 ASCB EMBO Meeting in Washington, DC (December 7-11)
List by | Madhuja Samaddar et al. |
SDB 78th Annual Meeting 2019
A curation of the preprints presented at the SDB meeting in Boston, July 26-30 2019. The preList will be updated throughout the duration of the meeting.
List by | Alex Eve |
Autophagy
Preprints on autophagy and lysosomal degradation and its role in neurodegeneration and disease. Includes molecular mechanisms, upstream signalling and regulation as well as studies on pharmaceutical interventions to upregulate the process.
List by | Sandra Malmgren Hill |
Young Embryologist Network Conference 2019
Preprints presented at the Young Embryologist Network 2019 conference, 13 May, The Francis Crick Institute, London
List by | Alex Eve |