Multiple overlapping hypothalamus-brainstem circuits drive rapid threat avoidance

Matthew Lovett-Barron, Ritchie Chen, Susanna Bradbury, Aaron S Andalman, Mahendra Wagle, Su Guo, Karl Deisseroth

Preprint posted on 24 August 2019

Article now published in Nature Neuroscience at

Stressed? The hypothalamus in action again, but it’s complicated! Lovett-Barron et al. investigate the brain areas controlling stress-induced avoidance behaviour

Selected by Amrutha Swaminathan, Rudra Nayan Das


When animals encounter stressful situations, their response can be immediate (the flight or fight response) or longer term (molecular and hormonal adaptation). While the mechanisms underlying long-term adaptation to stress are better studied in terms of the brain regions involved [1], the neural basis of short-term response to stress remains less understood. The present study utilizes the zebrafish model system to identify the neural correlates of fast responses to stress.

Key findings:

In this preprint, Lovett-Barron et al.use a combination of whole brain neural-activity imaging of larval zebrafish, analysis of fast stress response behavior and multiplexed molecular signatures to delineate the neural circuitry that is involved in transducing the hypothalamic signal to a motor response.

The authors first demonstrate that fast responses can be quantified by measuring tail movements of larval zebrafish in response to stressful stimuli like salt, acidity and heat. To identify the brain regions involved in the processing of the above-mentioned stimuli and the execution of the fast responses, the authors performed whole brain two-photon Ca2+imaging on these animals as they responded to the various stimuli. They find that the preoptic hypothalamus and the forebrain are activated during this process. The hypothalamus plays a key role in long-term stress response.  It is composed of diverse neuronal cell types (often classified based on the expression and secretion of different neuropeptides/marker genes), making it challenging to correlate these neuronal subtypes with behavioral responses. The neuropeptides secreted by hypothalamic neurons include: oxytocin, vasopressin, somatostatin, neuropeptide Y, agouti-related peptide, thyrotropin releasing hormone and corticotrophin releasing hormone.

In order to understand the neuropeptide signature of the neurons activated by the stressful stimuli, the authors employ a modified version of a tool previously described by their laboratory: Multi-MAP [2]. In this technique, the authors first record brain activity upon exposure to the stimuli, and perform in situhybridization for 9 different neuropeptides (3 at a time followed by removal of these 3, and staining for another 3 and so on). From this analysis, the authors find that the neurons involved in fast response to stress are a pool of molecularly diverse neurons, rather than being characterized by a specific neuropeptide. There is hence, no direct correlation between the type of stressful event and the neuropeptide content of stress-responsive neurons in the hypothalamus. The authors further prove this by showing that optogenetic activation or drug-mediated ablation of clusters of neurons characterized by a single neuropeptide does not affect fast stress response. In contrast, a broader activation or ablation using a marker expressed by multiple peptidergic cell types (an almost pan-hypothalamic marker) is capable of perturbing the fast response.

Strategy to identify brain regions involved in rapid threat avoidance: Upper panel – Schematic of the stress-induced avoidance response assay. Presentation of different stressors induces tail movements in head-restrained zebrafish. The rate of tail turns increases in presence of the stressors, as plotted in the graph. (Adapted from Fig. 1a,b)
Lower panel – Schematic of the MultiMAP approach. Stress-induced neuronal activity is recorded by GCaMP imaging, followed by fixation and multiple rounds of in situ hybridization. Cellular-resolution registration of GCaMP images to the in situ imaging allows correlation of neuronal activity with cell-identity. (Adapted from Fig. 3a)

In an attempt to trace the circuitry that mediates hypothalamic neuronal inputs to activate motor response (avoidance behavior), Lovett-Barron et al.injected fluorescent dye in the spinal projection neurons (SPNs), and found the axons from these neurons in the hindbrain. Further, hypothalamic reporter lines showed prominent projections to a specific set of spinal projection neurons called the rostral lateral interneuron 1 (RoL1). The authors then show that these neurons are activated during the stress-induced avoidance behaviour and their ablation affects this behaviour. This response was also perturbed by local application of a glutamate ionotropic receptor blocker, indicating that the RoL1 neurons are likely to be activated through glutamatergic neurotransmission. Supporting this idea, the authors found that a vast majority of the peptidergic neurons of the hypothalamus are indeed vglut2a+, a strong indicator that these neurons are glutamatergic.

To summarize, the authors identify, using a combination of techniques and young zebrafish larvae, the neural basis of fast response to stress. Hypothalamic neurons, which are involved in the slow response, are also involved in the fast response to stress. However, in contrast to many previous studies where single population of neurons, like oxytocinergic neurons, were studied in relation to their role in the stress response, it seems to be unlikely that there is a specific connection between the peptidergic identity of a cell and its role in the fast stress response [3]. Rather, glutamatergic neurotransmission through the hypothalamic neurons might be crucial for rapid avoidance behavior.

Why do we like this work?

As the authors have pointed out in the manuscript, the neural basis underlying fast response to stress is not well understood, and the study addresses this caveat in the field. Specifically, we liked the following features of this study:

  1. The authors used an unbiased approach to narrow down on the hypothalamic neurons as being associated with fast response. They are able to integrate multiple techniques to pinpoint the activity, molecular identity and circuitry of the hypothalamic neurons involved in this process.
  2. This study adds to our understanding of context-dependent function of modulatory neurons. It suggests that although similar brain regions might be involved for different responses (fast vs slow) for the same stimuli (a particular stress), the specific recruitment of neurons or even the neurotransmitters might be different. These differences can only be well characterized by using methods that allow for high resolution characterization of neuronal activity and identity, which in vertebrate model systems is a big challenge. Furthermore, in the light of this work, future studies need to be careful when attributing a particular cell type with stress response. The MultiMap technique, where expression of a large number of genes in functionally active cells can be analyzed, at single-cell resolution, opens up new experimental opportunities.

Future directions/questions for the authors:

  1. The authors correlate tail turns with avoidance behavior. Can these be directly correlated?
  2. The authors do not observe any effect on tail movement when they ablate specific cell types in the hypothalamus. Is it possible that ablation leads to subtler effects, which might be not reflected by tail turns?
  3. In the discussion, the authors have suggested a hypothalamic stress response model, where fast responses to stress are mediated through fast-acting glutamatergic neurotransmission, and the slow homeostatic responses through slow, but more wide-acting neuropeptides. In this context, do the authors have any information on what kind of receptors are present in the RoL1 neurons? It would be very interesting to know whether the RoL1 neurons can only be stimulated by hypothalamic glutamate input, or also by other neuropeptide inputs.


  1. Herman, J.P. and J.G. Tasker, Paraventricular Hypothalamic Mechanisms of Chronic Stress Adaptation.Front Endocrinol (Lausanne), 2016. 7: p. 137.
  2. Lovett-Barron, M., et al., Ancestral Circuits for the Coordinated Modulation of Brain State.Cell, 2017. 171(6): p. 1411-1423.e17.
  3. Sippel, L.M., et al., Oxytocin and Stress-related Disorders: Neurobiological Mechanisms and Treatment Opportunities.Chronic Stress (Thousand Oaks), 2017. 1.



Posted on: 3 November 2019 , updated on: 4 November 2019


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