3D Gastruloids
A curated list of preprints related to Gastruloids (in vitro models of early development obtained by 3D aggregation of embryonic cells). Updated until July 2021.
List by Paul Gerald L. Sanchez and Stefano Vianello
Preprints:
Hypoxia induces a transcriptional early primitive streak signature in pluripotent cells enhancing spontaneous elongation and lineage representation in gastruloids
Quantitative comparison of in vitro and in vivo embryogenesis at a single cell resolution
https://www.biorxiv.org/content/10.1101/2021.05.07.443179v1
The authors compare new and published scRNAseq data of in vitro embryonic models and real embryos, and discuss the rationale that would justify the choice of specific comparison strategies. In addition to benchmarking in vitro models against the embryo (i.e. their in vivo counterpart), the study also provides a comparison between in vitro models themselves (gastruloids, embryoid bodies, directed differentiation protocols).
The Gastruloid dataset used as a term of comparison is that published in van den Brink 2020, Day 5. Amongst other results, the authors find t=120h Gastruloids to best match E7.75-E8.25 embryos.
Single cell response landscape of graded Nodal signaling in zebrafish explants
https://www.biorxiv.org/content/10.1101/2021.04.25.441305v1
Single-cell characterisation of the cell types and morphogenesis arising when zebrafish explants respond to Nodal signals.
Nodal is sufficient to organise anterior-posterior identities of the explants.
In vitro teratogenicity testing using a 3D, embryo-like gastruloid system
Gastruloids as in vitro models of embryonic blood development with spatial and temporal resolution
https://doi.org/10.1101/2021.03.21.436320
An highlight of this preprint, with author comments, is available here
Dynamics of anteroposterior axis establishment in a mammalian embryo-like system
https://www.biorxiv.org/content/10.1101/2021.02.24.432766v1
The authors detail the initial symmetry breaking of Gastruloids, and explore systematically the cellular and biochemical parameters influencing this event. Furthermore, they profile early Gastruloids at single cell resolution and – by comparison with embryonic datasets – highlight important differences between modes of development executed by cells in Gastruloids compared to the embryo.
Bioengineered embryoids mimic post-implantation development in vitro
Integrating central and peripheral neurons in elongating multi-lineage-organized gastruloids
https://www.biorxiv.org/content/10.1101/2020.12.29.424774v1
Human Gastruloids develop central- and peripheral nervous system cell types, and are used as an in vitro platform to test neuromodulators
A FGF2-mediated incoherent feedforward loop induces Erk inhibition and promotes naïve pluripotency
https://www.biorxiv.org/content/10.1101/2020.11.11.378869v1
The study briefly employs mouse Gastruloids as an experimental platform to test the lineage potential of different stem cell populations.
Gastruloids generated without exogenous Wnt activation develop anterior neural tissues
https://www.biorxiv.org/content/10.1101/2020.10.10.334326v1
Description of the development of anterior neural identities in mouse Gastruloids by withdrawing Wnt stimulation
Embryological manipulation to probe early evo-devo in the fish Astyanax mexicanus
https://www.biorxiv.org/content/10.1101/2020.10.06.328500v1
Unique use of fish Gastruloids as a tool to probe eco-evo-devo questions in Mexican cavefish development.
An highlight of this preprint, with author comments, is available here
In vitro endoderm emergence and self-organisation in the absence of extraembryonic tissues and embryonic architecture
https://doi.org/10.1101/2020.06.07.138883
Description of the early emergence of endoderm progenitor markers within mouse Gastruloids, their later self-organisation and morphogenesis as epithelial tubes, and the Anterior-Posterior patterning of such endodermal domain.
Cell state transitions and collective cell movement generate an endoderm-like region in gastruloids
https://www.biorxiv.org/content/10.1101/2020.05.21.105551v1
First detailed characterisation of the cellular movements associated with mouse Gastruloid morphogenesis. Focus is given to endodermal cells, and the epithelial clusters they appear to be associated with.
Axial Elongation of Caudalized Human Pluripotent Stem Cell Organoids Mimics Neural Tube Development
https://www.biorxiv.org/content/10.1101/2020.03.05.979732v1
Description of the development of human Gastruloids, and of structures analogous to a neural tube within them.
Mouse embryonic stem cells self-organize into trunk-like structures with neural tube and somites
https://www.biorxiv.org/content/10.1101/2020.03.04.974949v1
Somite condensation and other morphological transformations can be induced by exposing mouse Gastruloids to extracellular matrix components. Gastruloids develop into so-called “Trunk-like Structures”
An highlight of this preprint is available here
Early neurulation recapitulated in assemblies of embryonic and extraembryonic cells
https://www.biorxiv.org/content/10.1101/2020.02.13.947655v1
First use of extraembryonic cells (extraembryonic endoderm) to induce the development of anterior and neural cell types from mouse Gastruloids
An highlight of this preprint, with author comments, is available here
Embryonic organoids recapitulate early heart organogenesis
https://www.biorxiv.org/content/10.1101/802181v3
Description of the development and organisation of cardiac fates in mouse Gastruloids
Self-organised symmetry breaking in zebrafish reveals feedback from morphogenesis to pattern formation
https://www.biorxiv.org/content/10.1101/769257v2
Generation of zebrafish Gastruloids (“pescoids”), and description of their development in vitro
An highlight of this preprint, with author comments, is available here
Emergence and patterning dynamics of mouse definitive endoderm
https://www.biorxiv.org/content/10.1101/728642v1
First detailed description of the timing and pattern of emergence of endoderm cells in mouse Gastruloids
A mesoderm-independent role for Nodal signaling in convergence & extension gastrulation movements
https://www.biorxiv.org/content/10.1101/671164v2
Zebrafish Gastruloids used as an experimental tool to test the intrinsic and extrinsic requirements for convergent extension movements in the fish embryo
Gastruloid development competence discriminates different states of pluripotency between naïve and primed
https://www.biorxiv.org/content/10.1101/664920v1
Mouse Gastruloids deployed as an experimental platform to test and discriminate between different stem cell potency states
Prediction and control of symmetry breaking in embryoid bodies by environment and signal integration
https://www.biorxiv.org/content/10.1101/506543v1
First evidence that the symmetry-breaking event in mouse Gastruloids may integrate not only biochemical/genetic inputs, but also the local mechanical environment
The chick caudo-lateral epiblast acts as a permissive niche for generating neuromesodermal progenitor behaviours
https://www.biorxiv.org/content/10.1101/243980v1.full
Mouse Gastruloids are used as an experimental source of cells (NMPs and others) to use in transplantation experiments
Gastruloids develop the three body axes in the absence of extraembryonic tissues and spatially localised signalling
https://www.biorxiv.org/content/10.1101/104539v1
Evidence for the existence of all three major developmental axes (Anterior-Posterior, Dorso-Ventral, Left-Right) in mouse Gastruloids
Interactions between Nodal and Wnt signalling Drive Robust Symmetry-Breaking and Axial Organisation in Gastruloids (Embryonic Organoids)
https://www.biorxiv.org/content/10.1101/051722v2
Description and quantification of the activity of key signalling pathways as mouse Gastruloids develop. First attempts at matching Gastruloid development with mouse embryonic stages
Generation of Aggregates of Mouse ES Cells that Show Symmetry Breaking, Polarisation and Emergent Collective Behaviour in vitro
https://www.biorxiv.org/content/10.1101/005215v2
A description of the original protocol for the generation of Gastruloids from mouse embryonic stem cells
Categories: bioengineering , cell biology , developmental biology
Posted on: 8 March 2020 , updated on: 24 July 2021
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